genome.fa.s8716.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008716.1 Hibiscus syriacus cultivar Beakdansim tig00111769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5677467

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  7  of  24  ( 2813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1731316--1731367	21	2.5	21	81	3	61	38	19	25	17	1.93
1731356--1731489	20	6.7	20	86	5	153	31	25	18	24	1.98
1732074--1732161	33	2.6	33	96	1	158	11	27	22	38	1.88
1732129--1732186	20	2.9	20	80	10	64	13	24	18	43	1.87
1733873--1734030	83	1.9	83	93	0	271	22	14	18	44	1.86
1734423--1734480	21	2.8	21	67	0	53	25	31	18	24	1.98
1735215--1735241	10	2.7	10	100	0	54	59	22	11	7	1.56
1735307--1735381	10	7.7	10	72	21	70	58	21	10	9	1.59
1735311--1735375	16	4.1	16	91	0	112	58	23	10	7	1.57
1736109--1736183	24	3.1	24	87	11	93	56	20	12	12	1.67
1736109--1736174	14	5.3	13	71	26	54	56	18	12	13	1.68
1736122--1736207	24	3.6	23	82	14	95	52	22	13	11	1.73
1737185--1737274	33	2.7	33	91	0	144	42	20	22	15	1.89
1737185--1737245	19	3.5	19	74	21	69	44	21	22	11	1.84
1737279--1737400	19	7.2	19	63	25	76	15	22	18	43	1.88
1737274--1737400	33	3.9	32	84	8	175	15	22	18	43	1.88
1737267--1737399	66	2.0	66	94	0	230	17	21	18	42	1.90
1739691--1739715	12	2.1	12	100	0	50	0	28	0	72	0.86
1739890--1739943	24	2.2	24	90	0	81	38	20	16	24	1.92
1741001--1741058	20	2.9	20	97	0	107	37	24	22	15	1.93
1741077--1741144	19	3.8	19	83	12	92	13	20	17	48	1.80
1741267--1741303	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1743169--1743236	20	3.5	19	82	6	82	38	23	23	14	1.92
1743225--1743282	14	3.9	14	75	16	62	50	24	15	10	1.75
1743209--1743280	32	2.2	33	95	2	128	48	22	16	12	1.79
1743316--1743373	14	3.9	14	79	16	71	10	17	24	48	1.78
1743299--1743389	32	2.8	33	94	3	166	12	18	21	47	1.81
1743904--1743948	18	2.5	18	88	0	72	13	15	44	26	1.83
1745268--1745305	20	1.9	20	88	0	58	50	21	15	13	1.78
1745589--1745632	22	2.0	22	90	0	70	20	15	43	20	1.88
1745821--1745872	20	2.6	20	93	0	86	25	21	28	25	1.99
1745800--1745914	20	5.7	19	77	9	77	24	17	24	33	1.96
1745841--1745935	41	2.3	41	80	3	102	21	20	23	35	1.96
1747464--1747516	4	14.5	4	81	18	71	73	0	26	0	0.83
1747465--1747517	7	7.4	7	97	2	97	71	0	28	0	0.86
1748719--1748765	24	2.0	24	83	8	60	44	0	2	53	1.12
1750752--1750949	107	1.9	107	90	2	317	35	3	18	42	1.67
1761655--1761687	16	2.1	16	100	0	66	24	0	48	27	1.51
1763966--1763990	2	12.5	2	100	0	50	48	0	0	52	1.00
1765752--1765785	17	2.1	17	94	5	61	38	0	0	61	0.96
1767658--1767779	60	2.1	60	84	4	160	33	13	13	40	1.83
1774832--1774867	16	2.3	15	95	4	63	66	5	16	11	1.40
1780543--1780585	2	21.5	2	90	9	70	51	2	0	46	1.13
1780543--1780585	21	2.0	21	95	0	77	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1784318--1784382	32	2.0	32	82	5	78	38	10	4	46	1.60
1786201--1786573	156	2.4	156	83	4	484	27	17	4	51	1.64
1786220--1786619	156	2.6	156	82	3	473	28	17	5	48	1.69
1788402--1788451	26	1.9	26	91	0	82	42	20	6	32	1.76
1788800--1788844	23	1.9	24	81	4	56	35	8	8	46	1.66
1793867--1793957	22	4.1	22	77	14	82	59	2	0	38	1.10
1793908--1793961	18	3.1	17	77	15	56	64	0	0	35	0.94
1793904--1793967	19	3.2	19	75	20	60	65	0	0	34	0.93
1794729--1794796	32	2.2	31	83	2	82	63	7	1	27	1.30
1796600--1796638	15	2.6	15	95	0	69	25	23	10	41	1.86
1803244--1803315	24	3.0	24	80	9	94	52	16	11	19	1.73
1803252--1803312	12	5.3	11	75	11	50	54	16	11	18	1.71
1805039--1805088	23	2.2	23	82	7	57	14	16	48	22	1.81
1819983--1820007	13	1.9	13	100	0	50	20	32	8	40	1.81
1820706--1820814	49	2.2	49	86	0	155	18	22	19	40	1.92
1825964--1826029	3	22.3	3	85	3	89	39	0	0	60	0.97
1825957--1826037	12	7.0	12	74	22	50	39	0	0	60	0.97
1826498--1826539	15	2.8	15	89	7	59	76	2	21	0	0.90
1826498--1826539	20	2.1	20	86	8	59	76	2	21	0	0.90
1827414--1827630	109	2.0	107	80	7	242	39	8	8	43	1.66
1839953--1839987	16	2.2	16	89	0	52	28	20	17	34	1.95
1840022--1840064	16	2.7	16	89	7	61	32	16	4	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1842876--1842916	6	6.8	6	100	0	82	31	34	34	0	1.58
1844792--1844899	46	2.3	47	79	4	130	29	22	24	24	1.99
1845658--1845697	16	2.5	16	88	8	55	40	10	25	25	1.86
1845722--1845808	44	2.0	44	83	2	111	42	5	10	41	1.63
1845776--1845843	35	2.0	35	94	2	120	36	2	14	45	1.60
1847991--1848026	16	2.3	15	90	4	54	33	2	5	58	1.36
1852727--1852825	49	2.0	49	88	7	148	42	16	13	28	1.85
1853473--1853516	21	2.1	21	82	0	52	11	6	18	63	1.48
1854273--1854343	28	2.5	28	76	0	70	40	16	14	28	1.87
1855760--1855824	31	2.1	31	97	0	121	41	3	13	41	1.60
1855987--1856029	17	2.5	17	82	10	52	67	0	2	30	1.03
1855988--1856038	8	6.1	8	74	17	50	68	0	1	29	1.00
1856730--1856805	35	2.1	36	82	2	91	60	3	2	32	1.29
1856797--1856827	7	4.6	7	96	4	55	77	0	0	22	0.77
1859268--1859386	35	3.3	36	90	5	188	43	17	5	33	1.71
1863884--1863993	35	3.1	35	88	5	150	43	19	4	32	1.71
1870255--1870297	21	2.0	21	82	8	52	58	9	0	32	1.30
1878275--1878340	29	2.3	29	83	0	78	24	19	19	36	1.95
1880688--1880726	20	2.0	20	89	0	60	46	23	12	17	1.83
1904792--1904848	30	1.9	30	92	0	96	38	10	5	45	1.61
1904792--1904855	30	2.2	30	88	2	94	39	12	4	43	1.63
1916017--1916114	36	2.8	35	84	3	124	42	26	1	29	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1916547--1916838	147	2.0	148	93	0	496	47	8	6	37	1.60
1916994--1917089	35	2.7	35	87	3	122	28	1	29	41	1.63
1925660--1925996	68	5.0	68	83	4	439	27	11	11	49	1.73
1925679--1925855	31	5.3	31	64	15	84	25	11	12	49	1.75
1936011--1936048	16	2.4	16	86	4	51	34	18	7	39	1.80
1958066--1958347	8	35.2	8	92	0	438	49	29	0	20	1.54
1958066--1958347	12	23.5	12	93	0	438	49	29	0	20	1.54
1958066--1958347	20	14.1	20	94	0	438	49	29	0	20	1.54
1966148--1966186	21	1.9	20	89	5	60	5	0	46	48	1.24
1981146--1981441	43	7.2	40	71	18	175	46	5	21	26	1.72
1981160--1981388	117	2.0	115	87	5	336	46	4	23	25	1.72
1981275--1981442	85	2.0	85	81	6	198	50	4	19	25	1.67
1981307--1981450	42	3.4	41	80	11	132	50	6	19	23	1.70
1981148--1981452	159	1.9	158	82	5	375	48	5	20	25	1.70
1989453--1989516	23	2.8	23	76	9	76	20	18	12	48	1.80
1991083--1991108	9	2.9	9	100	0	52	69	0	7	23	1.14
1999552--1999799	130	1.9	130	91	0	406	35	14	13	36	1.85
1999566--1999830	130	2.0	129	80	4	291	38	12	13	34	1.83
2000129--2000191	28	2.3	27	78	8	63	46	1	3	49	1.27
2000271--2000303	17	1.9	17	88	11	50	63	6	3	27	1.32
2000426--2000468	21	2.0	21	100	0	86	39	0	13	46	1.44
2000437--2000522	35	2.5	35	84	0	100	37	1	20	40	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2011100--2011162	26	2.3	28	83	8	85	55	0	11	33	1.35
2015864--2015920	25	2.3	23	82	14	69	50	5	0	43	1.24
2036429--2036491	26	2.3	28	83	8	85	55	0	11	33	1.35
2041158--2041214	25	2.3	23	82	14	69	50	5	0	43	1.24
2048616--2048650	2	17.5	2	100	0	70	51	0	0	48	1.00
2048991--2049048	31	1.9	31	85	3	82	36	8	6	48	1.61
2064338--2064363	13	2.0	13	100	0	52	30	15	7	46	1.74
2069985--2070049	33	2.0	33	88	11	98	38	20	21	20	1.94
2071898--2071937	21	2.0	20	85	5	53	10	7	35	47	1.65
2074683--2074720	19	2.0	19	100	0	76	26	21	21	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24