genome.fa.s8716.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008716.1 Hibiscus syriacus cultivar Beakdansim tig00111769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5677467

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  3  of  24  ( 2813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424419--424546	63	2.0	63	100	0	256	36	7	29	25	1.84
434360--434440	40	2.1	39	95	2	144	18	17	27	37	1.93
435597--435797	103	1.9	103	93	2	348	37	9	4	47	1.57
441978--442120	56	2.5	57	86	3	191	33	16	15	34	1.90
443997--444040	22	2.0	23	90	4	72	45	27	15	11	1.81
445392--445460	19	3.7	19	67	16	54	47	1	2	47	1.25
445593--445622	2	15.0	2	100	0	60	50	0	0	50	1.00
451817--451841	2	12.5	2	100	0	50	52	0	0	48	1.00
452538--452664	60	2.1	60	81	5	150	33	23	4	37	1.76
452910--453023	60	1.9	60	83	7	151	43	4	21	30	1.72
453107--453149	18	2.3	18	88	4	59	51	9	4	34	1.55
458033--458089	30	1.9	30	85	0	78	33	14	14	38	1.85
458908--458936	2	14.5	2	100	0	58	48	0	0	51	1.00
459838--459883	21	2.1	22	88	4	67	26	15	28	30	1.96
467158--467218	31	2.0	31	93	0	104	49	13	14	22	1.78
468594--468632	2	19.5	2	100	0	78	51	0	0	48	1.00
470885--470912	2	14.0	2	100	0	56	50	0	0	50	1.00
473624--473699	28	2.7	28	75	15	77	35	5	18	40	1.73
473804--473841	2	19.0	2	100	0	76	50	0	0	50	1.00
475108--475166	31	1.9	31	92	0	100	28	18	18	33	1.95
476913--477698	198	4.0	198	87	4	1168	22	10	23	43	1.85
482416--482581	83	2.0	83	98	0	323	15	22	16	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484844--484884	20	2.0	20	85	0	55	43	4	0	51	1.23
488427--488455	14	2.0	15	93	6	51	41	0	0	58	0.98
488600--488644	18	2.5	19	79	13	51	31	2	0	66	1.04
488592--488644	22	2.4	21	79	17	54	32	1	1	64	1.15
490542--490580	2	19.5	2	100	0	78	0	51	0	48	1.00
505259--505288	12	2.4	12	94	5	51	80	0	16	3	0.85
519231--519282	2	26.0	2	100	0	104	50	0	0	50	1.00
519282--519309	2	14.0	2	100	0	56	50	0	50	0	1.00
523153--523381	121	1.9	121	95	0	413	44	19	12	23	1.85
524612--524651	10	4.0	10	90	0	62	60	22	7	10	1.54
524632--524682	27	1.9	26	84	4	66	60	19	7	11	1.55
524941--524996	24	2.2	26	87	9	89	51	14	12	21	1.74
529815--529839	1	25.0	1	100	0	50	100	0	0	0	0.00
535276--535304	13	2.2	13	100	0	58	34	0	10	55	1.34
536018--536128	47	2.3	50	95	4	201	45	28	9	16	1.79
545629--545680	8	6.6	8	93	2	61	53	0	0	46	1.00
545636--545679	2	22.0	2	95	0	79	52	0	0	47	1.00
553385--553442	26	2.2	27	96	3	109	20	20	12	46	1.82
553530--553569	20	2.0	20	85	5	53	60	22	5	12	1.52
562119--562274	60	2.6	59	81	4	179	39	4	20	35	1.73
585764--585813	22	2.3	22	89	0	73	32	6	0	62	1.20
587082--587150	28	2.5	27	90	4	120	13	8	33	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587143--587538	212	1.8	218	87	5	597	25	12	25	37	1.90
587528--587599	37	1.9	37	97	0	135	12	11	36	40	1.79
588153--588199	18	2.8	17	81	9	60	31	23	4	40	1.74
593736--593796	22	2.7	22	70	12	52	44	1	0	54	1.10
598396--598431	3	12.0	3	93	0	63	33	2	0	63	1.08
600548--600586	19	2.1	19	100	0	78	43	15	15	25	1.86
601448--601813	183	2.0	183	89	3	558	47	8	3	40	1.48
602364--602417	21	2.7	20	85	2	72	33	24	20	22	1.97
602364--602419	20	2.7	21	86	2	78	32	23	19	25	1.98
602460--602496	19	1.9	19	94	0	65	32	2	27	37	1.71
611609--611634	5	5.2	5	100	0	52	19	0	19	61	1.35
611854--611878	13	1.9	13	100	0	50	76	0	16	8	1.02
616976--617035	31	1.9	31	89	0	93	26	21	8	43	1.81
617511--617607	24	3.7	24	73	26	97	46	0	1	52	1.07
617503--617576	13	5.9	12	69	20	53	44	0	1	54	1.08
617509--617637	57	2.2	57	91	6	208	44	0	0	55	1.05
617617--617662	19	2.4	18	82	13	56	41	2	0	56	1.11
618150--618209	31	1.9	31	89	0	93	45	10	5	40	1.60
625345--625491	60	2.5	60	84	4	181	40	12	10	36	1.79
650382--650978	270	2.3	254	84	11	794	25	12	21	40	1.88
652297--652845	258	2.2	245	88	9	802	40	19	12	27	1.88
654759--654807	26	1.9	25	84	12	64	42	12	0	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656082--656110	2	15.0	2	92	7	51	51	0	0	48	1.00
658333--658480	74	2.0	74	100	0	296	32	18	18	29	1.96
658837--658883	18	2.5	19	80	13	53	72	8	2	17	1.19
658983--659106	60	2.1	60	83	8	155	37	14	11	36	1.82
664362--664407	8	5.8	8	97	0	83	39	21	10	28	1.87
667537--667563	6	4.5	6	100	0	54	14	33	0	51	1.43
667773--667823	2	25.5	2	100	0	102	49	0	0	50	1.00
668571--668730	61	2.7	58	74	11	160	38	6	23	31	1.79
668524--668909	205	1.9	204	83	5	510	39	8	20	31	1.83
670951--671144	8	25.2	8	86	8	269	38	25	10	25	1.87
671120--671264	51	2.7	54	89	7	224	34	25	10	29	1.89
671241--671334	42	2.4	36	81	13	107	37	22	9	30	1.86
671241--671325	38	2.2	38	81	12	93	37	22	9	30	1.86
672185--672213	15	1.9	15	100	0	58	6	31	27	34	1.83
676815--676841	4	6.8	4	100	0	54	48	0	0	51	1.00
688634--688697	6	10.2	6	75	18	51	46	0	7	45	1.32
688786--688816	16	1.9	16	93	0	53	48	0	3	48	1.17
695181--695210	2	15.0	2	100	0	60	50	0	0	50	1.00
695588--695656	23	3.1	23	77	6	63	15	20	11	52	1.74
698145--698183	19	2.1	18	85	4	51	43	5	10	41	1.61
698145--698210	21	3.2	21	77	12	66	40	3	15	40	1.62
699060--699102	21	2.0	21	86	0	59	30	27	25	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699082--699232	67	2.3	67	87	4	207	26	27	27	18	1.98
699538--699609	29	2.5	29	90	0	108	37	11	12	38	1.79
699624--699682	30	1.9	31	86	3	84	37	6	22	33	1.80
699902--699946	22	2.0	22	100	0	90	20	26	26	26	1.99
699902--699954	22	2.4	22	93	0	79	20	24	24	30	1.99
705971--706013	21	2.0	21	86	0	59	30	27	25	16	1.97
705993--706141	67	2.2	66	88	3	210	26	26	27	18	1.98
706447--706518	29	2.5	29	90	0	108	37	11	12	38	1.79
706533--706591	30	1.9	31	86	3	84	37	6	22	33	1.80
706811--706855	22	2.0	22	100	0	90	20	26	26	26	1.99
706811--706863	22	2.4	22	93	0	79	20	24	24	30	1.99
737339--737371	15	2.2	15	94	0	57	48	18	6	27	1.71
739027--739068	17	2.4	18	80	11	52	28	2	0	69	1.01
739720--739776	23	2.5	22	73	15	53	54	3	8	33	1.48
740205--740277	21	3.4	21	75	16	62	57	0	2	39	1.13
745395--745470	35	2.2	35	97	0	143	15	15	34	34	1.90
745826--745864	18	2.1	19	85	4	53	58	0	41	0	0.98
751335--751409	3	24.7	3	97	2	141	34	0	65	0	0.93
751403--751447	3	15.0	3	95	0	81	64	0	35	0	0.94
751322--751447	9	14.2	9	92	3	67	48	0	51	0	1.00
751479--751553	3	24.7	3	97	2	141	68	0	32	0	0.90
758051--758077	13	2.1	13	100	0	54	40	0	44	14	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
758222--758267	23	2.0	23	82	0	56	26	17	17	39	1.91
763309--763343	2	18.0	2	88	5	54	45	0	2	51	1.16
766974--767013	7	5.7	7	100	0	80	0	42	30	27	1.56
771619--771656	19	2.0	19	85	10	51	7	28	7	55	1.57
774270--774345	29	2.5	30	79	12	75	30	0	3	65	1.10
776590--776623	17	2.0	17	88	0	50	29	23	0	47	1.52
776670--776754	35	2.5	33	76	14	82	27	8	10	54	1.63
780703--780832	51	2.6	49	84	8	149	49	15	10	25	1.75
781379--781515	60	2.3	59	83	3	168	33	10	18	37	1.85
783047--783076	6	5.0	6	95	0	51	53	16	30	0	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24