genome.fa.s8716.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008716.1 Hibiscus syriacus cultivar Beakdansim tig00111769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5677467

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  11  of  24  ( 2813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2748643--2748676	4	8.5	4	100	0	68	26	50	23	0	1.50
2750812--2750846	2	18.0	2	94	5	63	0	51	0	48	1.00
2750812--2750844	17	1.9	17	100	0	66	0	51	0	48	1.00
2762630--2762676	23	2.0	25	87	8	71	61	10	12	14	1.56
2762628--2762681	23	2.4	21	80	17	63	62	11	12	12	1.54
2763130--2763162	17	1.9	17	88	11	50	69	9	0	21	1.15
2773360--2773407	16	3.1	16	84	3	62	31	8	12	47	1.71
2778006--2778069	20	3.2	20	77	4	74	14	20	23	42	1.88
2778006--2778100	41	2.3	41	82	8	113	16	21	22	40	1.92
2778643--2778668	6	4.3	6	100	0	52	0	19	46	34	1.50
2779709--2779752	2	22.0	2	100	0	88	50	0	0	50	1.00
2783694--2783738	20	2.2	21	88	4	65	42	2	2	53	1.25
2783771--2783795	12	2.1	12	100	0	50	48	0	0	52	1.00
2790559--2791327	299	2.6	297	88	4	1095	40	20	13	25	1.89
2807465--2807558	41	2.2	43	81	10	106	51	9	1	38	1.42
2810761--2810874	23	5.0	23	92	2	167	20	28	26	25	1.99
2813409--2813488	30	2.7	30	96	1	144	35	7	16	41	1.76
2813673--2813714	21	2.0	21	95	0	75	23	21	28	26	1.99
2813743--2813782	20	1.9	21	85	10	55	37	37	10	15	1.80
2815519--2815567	23	2.1	24	88	3	73	55	0	2	42	1.11
2815519--2815569	24	2.1	24	88	3	75	54	0	1	43	1.11
2816876--2816982	17	6.4	18	66	25	67	40	0	0	58	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2816874--2816983	29	3.6	29	73	23	91	39	0	0	60	1.03
2816888--2817036	65	2.3	66	90	5	232	41	0	1	56	1.12
2817031--2817092	19	3.3	19	78	15	58	37	1	0	61	1.06
2818181--2818454	137	2.0	137	95	0	494	35	12	18	33	1.88
2830247--2830361	24	4.8	24	89	4	169	40	20	13	26	1.89
2833649--2834098	105	4.3	105	91	2	685	22	18	26	32	1.97
2834666--2835155	73	7.2	67	74	13	236	38	11	19	30	1.88
2834834--2835095	36	7.4	36	79	10	272	40	13	19	27	1.89
2834870--2835053	101	1.8	101	90	2	298	40	14	17	28	1.88
2834783--2835161	137	2.8	136	86	2	490	39	12	18	28	1.88
2836056--2836099	22	2.0	22	91	8	72	27	11	22	38	1.88
2836697--2836734	9	4.6	8	87	12	51	0	10	5	84	0.77
2836705--2836746	11	3.7	11	87	12	59	0	9	7	83	0.81
2836703--2836752	9	5.3	9	81	9	64	0	10	6	84	0.79
2837936--2837974	8	5.0	8	84	6	53	58	12	17	10	1.61
2837936--2837974	15	2.5	15	87	4	51	58	12	17	10	1.61
2840661--2840695	16	2.1	18	89	10	56	65	0	8	25	1.21
2840706--2840743	20	1.9	20	88	0	58	63	2	7	26	1.35
2841654--2841698	21	2.1	21	87	0	63	31	28	24	15	1.96
2842280--2842314	18	1.9	18	88	11	54	54	5	17	22	1.64
2843212--2843813	149	4.0	149	99	0	1177	26	15	20	36	1.93
2843791--2843836	23	2.0	23	82	0	56	23	21	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2846905--2846949	21	2.1	21	87	0	63	31	28	24	15	1.96
2847534--2847568	18	1.9	18	88	11	54	54	5	17	22	1.64
2848462--2849063	149	4.0	149	99	0	1195	26	15	20	36	1.93
2849041--2849086	23	2.0	23	91	0	74	21	23	26	28	1.99
2854594--2854648	6	9.5	6	80	9	53	32	0	1	65	1.03
2854587--2854635	17	2.9	17	80	17	57	30	0	2	67	1.02
2854589--2854631	23	1.9	23	90	4	70	32	0	2	65	1.06
2854629--2854765	64	2.1	65	92	5	226	43	0	2	54	1.12
2855286--2855345	31	1.9	31	89	0	93	41	10	8	40	1.69
2864821--2864845	10	2.5	10	100	0	50	56	8	0	36	1.29
2865235--2865274	17	2.4	17	83	8	55	45	0	2	52	1.14
2875935--2876005	21	3.3	22	78	13	76	40	4	0	54	1.20
2879522--2879554	16	2.1	16	94	0	57	27	6	6	60	1.44
2885425--2885508	8	10.2	8	75	10	80	39	28	2	29	1.69
2902454--2902510	29	2.0	29	92	0	96	19	35	28	17	1.94
2902526--2902550	12	2.1	12	100	0	50	40	8	36	16	1.77
2902579--2902634	29	1.9	29	92	0	94	12	35	30	21	1.90
2902661--2902711	23	2.2	23	82	0	57	7	39	29	23	1.83
2907754--2907784	16	1.9	16	93	0	53	32	16	25	25	1.96
2912285--2912335	12	4.3	12	92	5	86	7	11	50	29	1.67
2912285--2912335	23	2.2	24	92	3	86	7	11	50	29	1.67
2912349--2912412	24	2.6	24	85	7	85	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2912444--2912487	13	3.5	13	81	3	54	15	13	50	20	1.78
2912551--2912575	6	4.2	6	100	0	50	0	64	16	20	1.30
2917456--2917506	20	2.6	20	84	3	68	29	25	27	17	1.98
2920735--2920760	13	2.0	13	100	0	52	7	0	15	76	0.99
2926904--2927152	30	8.0	30	71	13	155	30	24	14	30	1.94
2926970--2927113	34	4.5	34	71	18	119	31	26	13	28	1.94
2926897--2927142	94	2.6	93	88	2	350	31	26	13	29	1.94
2929597--2930328	367	2.0	358	91	3	1173	30	19	17	32	1.95
2932314--2932378	27	2.4	27	100	0	130	44	9	3	43	1.51
2933138--2933168	16	2.0	15	93	6	53	51	0	0	48	1.00
2934526--2934553	2	14.0	2	100	0	56	50	0	0	50	1.00
2937298--2937356	29	2.0	29	96	0	109	44	16	5	33	1.70
2941346--2941400	23	2.3	24	76	17	60	58	0	0	41	0.98
2950054--2950094	17	2.3	18	80	12	50	31	0	21	46	1.52
2952496--2952546	18	2.8	18	78	0	57	49	17	1	31	1.58
2955850--2955906	22	2.6	23	81	8	66	56	1	1	40	1.20
2956133--2956245	2	56.5	2	100	0	226	49	0	0	50	1.00
2956817--2956870	25	2.2	25	93	0	90	20	14	20	44	1.86
2980855--2980885	2	15.5	2	100	0	62	51	0	0	48	1.00
2981028--2981085	21	2.8	21	80	19	61	25	24	17	32	1.96
2980999--2981085	20	4.2	21	68	19	67	25	24	16	34	1.95
2981012--2981095	20	4.2	20	72	11	64	25	25	15	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2981081--2981125	19	2.2	20	84	7	56	22	24	6	46	1.75
2981101--2981196	40	2.4	40	75	0	93	30	19	9	40	1.83
2981168--2981222	18	2.8	20	78	10	69	30	21	9	38	1.85
2981350--2981387	16	2.5	15	84	12	51	28	5	0	65	1.14
2982148--2982201	24	2.2	24	86	0	72	22	16	18	42	1.89
2982161--2982207	24	2.0	24	82	0	58	25	14	19	40	1.90
2984781--2984815	16	2.3	15	90	5	52	65	14	0	20	1.26
2986207--2986303	21	4.6	21	90	2	151	21	19	37	21	1.95
2986585--2986639	21	2.6	21	79	0	56	34	29	16	20	1.94
2986709--2986761	21	2.5	21	78	0	61	33	33	13	18	1.90
2986876--2986973	42	2.3	42	85	0	124	19	20	32	27	1.97
2988844--2988891	22	2.2	22	84	0	60	18	12	43	25	1.85
2989059--2989099	20	2.0	20	85	0	55	24	17	21	36	1.94
2989254--2989312	2	29.5	2	100	0	118	49	0	0	50	1.00
2994106--2994187	36	2.3	36	91	0	137	20	17	21	40	1.91
2994691--2994769	36	2.2	36	100	0	158	39	10	5	45	1.60
2995635--2995671	19	2.0	18	94	5	65	59	0	5	35	1.20
3007322--3007350	2	14.5	2	100	0	58	51	0	0	48	1.00
3015954--3015994	20	2.0	20	100	0	82	19	9	29	41	1.83
3027329--3027361	17	2.0	17	88	5	50	33	42	3	21	1.68
3044168--3044203	11	3.5	11	89	10	51	16	0	5	77	0.94
3045324--3045417	20	4.7	20	93	1	152	39	20	19	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3045324--3045435	40	2.8	41	86	6	140	37	21	19	21	1.94
3045615--3045702	22	4.0	22	93	0	149	25	39	14	20	1.90
3046039--3046196	20	8.6	19	75	16	84	13	17	23	45	1.84
3046071--3046194	20	6.6	20	79	10	100	12	17	25	44	1.84
3046032--3046196	73	2.3	73	90	2	251	13	16	23	46	1.82
3046091--3046194	53	1.9	54	94	1	183	10	17	25	47	1.79
3046088--3046196	20	5.8	20	80	12	115	10	17	23	48	1.77
3046065--3046216	73	2.1	73	83	2	189	15	16	21	46	1.84
3048078--3048220	20	7.5	20	78	9	138	41	20	18	18	1.90
3048078--3048252	93	1.9	93	91	0	287	42	20	19	17	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24