Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008716.1 Hibiscus syriacus cultivar Beakdansim tig00111769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5677467

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  24  of  24  ( 2813 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5576495--5576553
11
4.9
12
73
10
50
33
0
3
62
1.12
5576673--5576717
2
22.5
2
100
0
90
48
0
0
51
1.00
5576675--5576897
13
16.8
13
69
20
62
33
3
1
61
1.24
5576766--5576828
3
22.0
3
73
20
55
31
1
3
63
1.19
5576775--5576897
11
10.8
11
68
19
58
30
3
0
65
1.14
5576765--5576829
20
3.4
19
80
17
82
33
1
3
61
1.21
5576777--5576863
32
2.9
31
72
19
76
32
3
1
63
1.19
5576787--5576901
44
2.6
43
77
18
103
31
3
0
64
1.16
5588693--5588717
10
2.5
10
100
0
50
36
28
0
36
1.58
5588764--5588802
19
2.1
19
90
4
62
28
2
2
66
1.18
5590847--5590887
18
2.3
18
86
0
55
39
21
29
9
1.86
5591020--5591091
26
3.0
24
68
27
62
26
6
4
62
1.39
5598432--5598471
20
2.0
20
85
9
55
37
5
2
55
1.35
5599104--5599328
21
10.8
20
75
13
154
22
21
20
35
1.96
5599144--5599278
63
2.1
63
97
0
252
22
21
18
37
1.94
5599123--5599320
105
1.9
105
94
0
351
21
21
20
36
1.95
5599207--5599327
42
2.9
42
97
0
233
22
20
21
35
1.96
5599144--5599320
63
2.8
61
86
8
196
22
20
19
37
1.95
5599945--5599969
6
4.2
6
100
0
50
32
0
32
36
1.58
5600859--5600911
22
2.4
22
90
6
81
15
20
1
62
1.42
5603231--5603293
21
3.0
21
75
9
65
4
22
0
73
1.02
5603228--5603302
14
5.5
14
74
14
59
5
20
0
74
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5609976--5610014
19
2.2
19
86
9
55
56
0
2
41
1.13
5614168--5614256
11
7.9
11
74
13
65
71
1
4
22
1.10
5615066--5615103
20
1.9
20
88
0
58
21
26
10
42
1.85
5619040--5619083
21
2.1
21
83
8
54
22
36
22
18
1.95
5622049--5622074
10
2.6
10
100
0
52
46
34
11
7
1.69
5629893--5629939
20
2.3
20
100
0
94
31
8
21
38
1.83
5632074--5632493
210
2.0
210
100
0
840
28
13
23
34
1.93
5635432--5635474
15
2.9
15
86
3
52
2
20
2
74
1.04
5638038--5638099
24
2.6
24
77
7
65
24
4
1
69
1.17
5642111--5642157
10
4.5
10
81
7
58
2
4
10
82
0.88
5642111--5642161
14
3.4
14
73
21
50
1
3
11
82
0.89
5642104--5642160
26
2.1
26
84
12
71
1
5
12
80
0.95
5642906--5642939
16
2.1
17
89
10
54
70
5
0
23
1.09
5643812--5644099
43
6.7
43
85
2
337
27
15
23
32
1.95
5644511--5644592
21
3.9
21
77
0
74
1
35
20
42
1.60
5652435--5652486
18
2.9
18
88
0
77
21
13
42
23
1.88
5653486--5653686
41
4.9
41
88
1
280
30
18
15
34
1.93
5653745--5653883
71
2.0
71
92
0
233
23
21
16
38
1.93
5653858--5653964
41
2.6
40
80
10
110
25
21
16
36
1.94
5654103--5654167
32
2.0
32
96
0
121
24
13
15
46
1.82
5654110--5654180
32
2.4
29
84
13
99
23
14
16
45
1.84
5654444--5654570
66
1.9
68
86
3
186
29
8
23
38
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5656143--5656400
46
5.6
46
90
0
399
41
12
20
24
1.87
5659787--5659833
2
23.0
2
86
4
67
51
2
2
44
1.25
5662211--5662455
105
2.3
108
80
6
282
25
21
15
37
1.93
5662432--5662725
134
2.2
134
93
1
489
25
24
17
32
1.96
5663617--5663706
17
4.9
18
82
16
89
10
11
0
78
0.95
5663644--5663694
10
5.4
10
81
13
72
7
9
0
82
0.85
5663635--5663706
27
2.7
27
87
8
103
9
9
0
80
0.91
5663644--5663706
8
7.1
9
77
10
51
9
9
0
80
0.89
5675220--5675269
2
26.0
2
80
15
61
52
2
2
44
1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24

The End!