genome.fa.s8716.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008716.1 Hibiscus syriacus cultivar Beakdansim tig00111769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5677467

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  2  of  24  ( 2813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165566--165987	197	2.1	197	93	0	709	32	13	10	42	1.80
165937--165987	23	2.2	23	89	0	75	33	19	9	37	1.85
166559--166635	31	2.5	31	97	0	145	28	23	10	37	1.88
173551--173598	25	1.9	25	100	0	96	45	8	0	45	1.33
180148--180307	60	2.7	60	84	1	205	38	10	11	39	1.77
191616--191749	67	2.0	67	82	2	162	33	8	24	32	1.87
202848--202909	31	2.0	31	100	0	124	35	19	16	29	1.93
203180--203276	48	2.0	48	95	0	176	26	12	18	42	1.86
207250--207550	104	2.9	104	80	5	340	35	23	22	18	1.96
210920--211442	273	1.9	265	82	5	638	39	11	7	41	1.69
214533--214652	42	2.9	42	96	0	222	15	20	20	44	1.87
214826--214944	55	2.2	53	81	11	127	50	0	0	47	1.12
214824--214886	23	2.6	24	78	19	60	52	0	0	47	1.00
214841--214901	22	2.8	23	82	7	65	47	0	0	52	1.00
214930--214977	24	2.0	24	84	8	62	39	0	2	58	1.10
214924--215021	29	3.3	30	74	20	80	43	1	2	53	1.19
214942--214990	22	2.1	25	85	11	68	38	0	0	61	0.96
215187--215256	20	3.5	20	96	0	131	35	14	10	40	1.79
215187--215265	40	2.0	40	89	0	122	35	15	8	40	1.78
215239--215320	15	5.5	15	88	2	121	35	19	7	37	1.80
215239--215320	30	2.8	30	94	1	139	35	19	7	37	1.80
215239--215325	45	2.0	44	93	2	147	33	19	6	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216521--216748	126	1.8	126	82	3	298	38	11	15	34	1.84
219044--219078	15	2.3	15	95	0	61	28	0	2	68	1.04
231078--231132	26	2.1	26	86	0	74	60	0	16	23	1.36
232258--232302	23	1.9	24	86	4	65	28	8	4	57	1.48
243817--243853	10	3.6	10	92	3	56	72	0	2	24	0.97
243822--243854	13	2.5	13	86	13	50	75	0	0	24	0.80
247693--247727	17	2.1	17	89	5	54	22	5	2	68	1.24
250093--250256	59	2.8	59	82	6	206	37	7	21	32	1.83
250158--250374	118	1.8	118	82	5	278	38	10	21	29	1.87
250289--250422	59	2.3	58	83	7	164	38	10	19	31	1.85
253094--253133	19	2.1	19	90	4	62	40	15	20	25	1.90
258499--258541	22	1.9	23	85	4	61	67	4	2	25	1.22
262260--262290	13	2.4	13	100	0	62	35	6	6	51	1.53
263976--264014	5	7.8	5	100	0	78	41	20	17	20	1.91
270794--270838	24	1.9	23	90	4	72	37	2	6	53	1.40
282426--282458	14	2.2	16	89	10	52	15	0	9	75	1.03
283620--283691	36	2.0	36	86	7	103	58	15	16	9	1.63
294842--294916	29	2.6	29	80	2	96	36	13	32	18	1.90
295417--295515	31	3.3	31	69	13	98	34	14	6	45	1.69
296404--296464	31	1.9	32	86	3	88	54	8	8	29	1.59
299855--299879	7	3.6	7	100	0	50	88	0	12	0	0.53
300976--301058	30	2.7	30	81	3	76	19	16	15	48	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305530--305623	46	2.0	46	91	4	154	36	8	12	42	1.74
309834--310283	105	4.3	105	76	2	323	28	26	15	30	1.96
309837--310283	210	2.1	210	79	3	461	28	25	15	30	1.96
310112--310365	105	2.4	104	79	3	253	30	22	16	30	1.96
311414--311480	20	3.3	20	72	4	71	17	20	22	38	1.93
311474--311589	22	5.8	20	73	7	76	23	16	21	38	1.92
311474--311563	22	4.3	22	76	8	91	21	16	23	38	1.92
312165--312196	6	5.5	6	96	3	57	0	15	53	31	1.43
312193--312232	6	6.8	6	94	5	73	30	0	35	35	1.58
312187--312232	12	3.9	12	91	5	58	26	2	36	34	1.69
312509--312577	19	3.5	19	73	11	75	39	21	20	18	1.93
312509--312618	41	2.7	41	94	4	186	39	22	20	17	1.93
312527--312598	22	3.4	22	73	11	87	37	25	19	18	1.94
312590--312651	20	3.1	20	90	0	106	43	19	24	12	1.86
312521--312651	41	3.2	41	89	5	151	41	20	22	16	1.90
313232--313268	17	2.2	17	86	13	51	51	0	10	37	1.37
313950--313976	8	3.4	8	100	0	54	0	59	0	40	0.98
315056--315181	33	3.8	33	87	0	189	21	33	13	31	1.92
315121--315177	18	3.3	18	67	30	52	24	31	10	33	1.89
316083--316367	98	2.9	98	81	4	254	24	19	31	24	1.98
316012--316385	33	11.4	33	77	5	274	23	18	31	26	1.98
323303--323339	18	2.1	18	90	10	58	0	10	0	89	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323305--323339	12	2.8	12	91	4	52	0	11	0	88	0.51
330403--330489	29	2.9	29	75	3	75	48	4	13	33	1.63
339486--339543	26	2.3	26	85	8	75	63	6	0	29	1.20
340164--340215	21	2.5	21	81	3	61	38	19	25	17	1.93
340204--340317	20	5.7	20	84	6	140	33	24	18	23	1.97
340833--340879	19	2.5	19	92	0	76	51	25	14	8	1.71
340889--340976	33	2.6	33	90	1	131	12	25	23	38	1.90
340944--341001	20	2.9	20	80	10	64	13	24	18	43	1.87
343003--343125	42	2.9	42	80	2	122	22	36	17	22	1.95
343059--343125	21	3.2	21	66	6	55	23	35	20	19	1.95
344484--344519	14	2.6	14	95	0	63	30	0	25	44	1.54
344682--344808	33	3.9	32	86	8	184	14	22	19	43	1.88
344675--344807	66	2.0	66	95	0	239	16	21	19	42	1.89
344684--344808	19	7.4	18	65	24	76	15	21	19	44	1.87
345639--345882	75	3.3	72	76	14	219	43	3	6	45	1.47
345639--345884	38	6.6	36	77	11	221	43	3	6	46	1.46
345668--345928	36	6.9	38	77	13	231	43	3	6	46	1.45
345947--345979	17	2.0	17	88	5	50	24	0	0	75	0.80
347057--347101	9	4.8	9	78	10	54	22	4	0	73	1.01
349063--349087	12	2.1	12	100	0	50	0	28	0	72	0.86
350375--350492	20	5.9	20	97	0	200	36	22	23	17	1.95
350492--350621	19	6.8	19	98	0	242	16	20	16	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350618--350689	20	3.7	19	88	5	99	13	23	25	37	1.92
351165--351209	18	2.5	18	85	0	63	15	15	42	26	1.87
352528--352565	20	1.9	20	88	0	58	50	21	15	13	1.78
352829--352872	22	2.0	22	95	0	79	18	15	45	20	1.85
353098--353198	20	4.9	21	71	12	59	18	19	18	42	1.89
353060--353154	20	4.7	20	80	2	91	23	17	24	34	1.96
353082--353216	41	3.3	41	82	4	139	19	21	20	38	1.94
353143--353235	20	4.6	20	78	4	96	17	24	18	39	1.91
353143--353235	41	2.3	41	100	0	186	17	24	18	39	1.91
354497--354535	15	2.6	15	79	0	51	35	10	23	30	1.88
357907--357958	3	17.7	3	96	4	97	67	0	0	32	0.91
368677--368777	50	2.0	50	98	0	193	26	25	16	30	1.97
371289--371340	26	2.0	26	96	0	95	34	17	15	32	1.91
376076--376111	2	18.0	2	88	0	54	5	50	0	44	1.25
377168--377252	37	2.3	37	100	0	170	5	31	4	57	1.43
379329--379366	18	2.1	19	85	5	51	57	0	0	42	0.98
384243--384348	53	2.0	53	92	3	178	30	14	20	34	1.92
386356--386386	15	2.1	15	100	0	62	51	12	22	12	1.74
391522--392525	502	2.0	504	96	1	1836	31	13	12	41	1.82
394764--394788	2	12.5	2	100	0	50	52	0	0	48	1.00
397605--397759	59	2.6	59	74	8	134	38	14	12	34	1.84
400270--400382	60	1.9	60	85	7	158	41	9	10	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404007--404045	20	2.0	20	85	10	53	10	17	10	61	1.55
405284--405324	19	2.2	19	86	0	55	51	0	0	48	1.00
409311--409352	22	1.9	22	85	9	59	11	26	14	47	1.78
413552--413663	60	1.9	59	83	9	147	37	16	14	32	1.88
414866--414918	26	2.0	26	96	0	97	37	7	20	33	1.81
415199--415332	60	2.2	61	83	7	175	32	19	6	41	1.78
415902--415938	2	18.5	2	100	0	74	51	0	0	48	1.00
416239--416293	23	2.3	23	81	9	67	63	1	1	32	1.15
416203--416295	37	2.5	36	70	17	91	59	1	4	35	1.24
417173--417202	3	10.0	3	100	0	60	66	0	33	0	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24