genome.fa.s8953.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008953.1 Hibiscus syriacus cultivar Beakdansim tig00112281_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2822058

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  4  of  15  ( 1787 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590512--590566	3	18.0	3	85	7	67	40	0	0	60	0.97
591909--591935	2	13.5	2	100	0	54	48	0	0	51	1.00
591928--591973	22	2.2	22	85	11	62	32	0	2	65	1.05
591811--592187	143	2.6	142	82	6	435	36	6	8	48	1.61
597699--597764	12	5.3	12	75	20	64	84	0	15	0	0.61
597715--597764	15	3.3	15	91	8	84	88	0	12	0	0.53
597699--597764	24	2.8	24	88	6	91	84	0	15	0	0.61
602586--602662	22	3.5	22	96	0	145	33	11	14	40	1.82
603339--604143	76	10.6	76	95	0	1414	24	20	20	34	1.96
604075--604179	46	2.3	46	98	1	203	24	21	19	34	1.96
604303--604371	6	11.0	6	83	9	68	42	0	0	57	0.98
604304--604371	24	2.7	24	86	6	91	42	0	0	57	0.98
605652--605948	134	2.2	136	80	8	365	38	6	8	47	1.59
606029--606067	17	2.3	17	81	0	51	38	2	0	58	1.12
615349--615379	15	2.1	15	93	0	53	45	0	0	54	0.99
615540--615577	20	1.9	20	88	0	58	21	26	10	42	1.85
615789--616125	140	2.4	138	86	2	460	29	14	14	41	1.85
615789--616174	140	2.8	140	83	5	408	30	13	14	41	1.84
620720--620779	13	4.8	12	81	8	66	25	25	0	50	1.50
620722--620800	25	3.0	25	85	10	88	24	24	1	50	1.57
620832--620885	18	2.9	18	83	5	72	31	12	5	50	1.64
620832--620887	19	3.0	19	86	2	69	32	14	5	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622700--622772	31	2.4	31	79	9	78	36	21	6	34	1.81
625874--625912	20	2.0	20	84	0	51	33	33	20	12	1.91
630529--630570	22	1.9	22	90	9	68	19	21	19	40	1.92
632610--632755	41	3.5	41	71	2	130	29	15	20	34	1.93
633176--633223	20	2.5	20	86	3	62	54	0	0	45	0.99
633174--633229	28	2.0	29	82	6	71	53	1	0	44	1.11
633175--633239	29	2.2	30	75	8	71	50	1	1	46	1.20
633385--633456	35	2.1	35	84	7	94	52	0	1	45	1.09
633383--633457	34	2.2	33	81	11	89	53	0	1	45	1.08
634471--634525	13	4.2	13	75	13	58	49	10	3	36	1.56
634511--634609	33	3.0	33	94	1	164	45	15	7	32	1.73
634604--634643	21	1.9	21	94	0	71	47	7	15	30	1.72
637648--637948	5	59.8	5	95	4	520	41	0	0	58	0.98
641707--641743	6	6.3	6	82	17	51	83	0	16	0	0.64
641707--641743	11	3.2	12	85	14	51	83	0	16	0	0.64
641707--641742	17	2.1	17	90	10	56	83	0	16	0	0.65
642569--642717	56	2.6	55	82	6	163	36	21	14	27	1.92
642806--643399	251	2.4	250	88	2	874	33	23	17	25	1.96
644920--644959	18	2.3	18	87	12	57	17	2	0	80	0.83
645016--645051	17	2.1	17	90	10	56	13	8	0	77	0.98
645041--645070	7	4.1	7	91	8	51	26	0	0	73	0.84
645041--645070	15	2.1	15	93	6	53	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645226--645269	21	2.0	22	83	12	56	22	0	2	75	0.92
645342--645384	13	3.2	13	80	3	50	18	6	2	72	1.19
648231--648256	10	2.6	10	100	0	52	73	0	7	19	1.07
648209--648259	22	2.3	23	77	12	54	70	3	3	21	1.20
649945--649985	22	2.0	21	85	9	57	48	4	21	24	1.69
650010--650518	185	2.8	182	82	6	563	38	10	16	33	1.84
652204--652261	20	3.0	19	82	10	64	13	20	34	31	1.92
652204--652243	19	2.0	20	90	4	64	10	20	40	30	1.85
652210--652261	19	2.6	19	82	11	52	13	21	32	32	1.92
663084--663147	6	10.7	6	79	12	60	31	9	6	53	1.58
663084--663149	24	2.8	24	85	0	87	31	9	7	51	1.62
663084--663149	12	5.5	12	80	7	71	31	9	7	51	1.62
663084--663147	18	3.6	18	77	8	67	31	9	6	53	1.58
663539--664343	214	3.8	214	89	2	1183	36	12	12	38	1.82
664533--664694	76	2.2	72	85	7	211	42	12	14	30	1.83
666889--666929	5	8.2	5	80	20	50	19	2	0	78	0.87
671006--671065	18	3.3	18	80	19	63	23	13	3	60	1.48
674483--674521	15	2.6	15	91	0	60	51	10	30	7	1.64
678302--678378	7	11.4	7	76	19	58	83	0	10	6	0.82
678304--678372	21	3.3	21	78	11	79	82	0	11	5	0.83
678299--678377	33	2.4	31	82	12	88	82	0	11	6	0.84
678299--678381	17	5.1	16	75	20	57	81	0	10	7	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678305--678388	16	5.5	15	74	14	66	80	0	10	8	0.89
691106--691148	13	3.0	14	75	18	52	39	2	6	51	1.42
693408--693465	23	2.5	23	94	0	98	24	31	17	27	1.97
697256--697296	2	20.5	2	100	0	82	51	0	0	48	1.00
699249--699281	5	6.8	5	86	6	50	18	0	0	81	0.68
699254--699291	14	2.8	13	88	11	51	15	2	0	81	0.80
699243--699281	19	2.0	20	95	5	71	20	2	0	76	0.90
699791--700412	200	3.1	199	84	7	792	38	13	12	34	1.83
700537--701143	225	2.7	225	84	3	774	33	14	12	38	1.85
701977--702006	8	3.8	8	100	0	60	33	0	0	66	0.92
702039--702076	2	19.5	2	94	5	69	47	0	0	52	1.00
705565--705616	25	2.1	25	92	0	86	30	32	0	36	1.58
709577--709715	21	6.5	21	74	4	107	20	15	25	37	1.93
709635--709726	22	4.1	22	75	12	71	19	16	25	39	1.92
709975--710001	2	13.5	2	100	0	54	48	0	0	51	1.00
716708--716846	21	6.6	21	73	14	106	23	15	26	34	1.94
716738--716852	43	2.7	41	73	16	101	25	14	24	35	1.94
717506--717749	122	2.0	122	100	0	488	32	22	13	31	1.92
726576--726619	19	2.3	19	88	7	63	25	31	27	15	1.96
726576--726619	10	4.7	9	81	10	52	25	31	27	15	1.96
729983--730029	23	2.0	23	83	4	58	55	8	8	27	1.59
739418--739448	3	10.3	3	100	0	62	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
742720--742751	14	2.3	14	94	0	55	25	9	40	25	1.85
744463--744576	59	1.9	60	82	5	142	35	1	12	50	1.50
745130--745171	18	2.3	18	100	0	84	30	16	35	16	1.92
745216--745258	18	2.4	18	88	0	59	23	4	0	72	1.04
756683--756726	19	2.3	19	100	0	88	20	43	15	20	1.88
758243--758323	40	2.0	40	95	0	144	27	14	18	39	1.90
760063--760324	55	4.8	55	88	1	366	36	18	17	27	1.94
766242--766310	23	3.0	22	79	8	75	49	0	0	50	1.00
773423--773468	21	2.2	21	96	3	85	21	0	4	73	1.00
783150--783220	20	3.6	19	76	16	65	29	25	12	32	1.93
788497--788567	20	3.6	20	90	1	90	21	38	26	14	1.91
788914--788983	34	2.1	33	89	5	106	31	15	30	22	1.95
789843--789890	19	2.5	20	82	3	62	52	6	12	29	1.63
791289--791372	20	4.2	20	90	1	132	19	36	28	15	1.92
794706--794736	15	2.0	16	93	6	55	45	16	6	32	1.72
795291--795343	21	2.5	22	84	9	65	30	22	18	28	1.98
804032--804084	21	2.5	22	82	17	67	28	28	16	26	1.97
807756--807839	42	2.0	42	92	0	141	30	16	29	22	1.96
809732--809777	24	1.9	23	83	16	58	47	2	0	50	1.13
809779--809842	22	2.9	23	84	6	71	48	0	0	51	1.00
809775--809983	29	7.2	29	72	19	120	49	0	0	49	1.11
809908--809977	36	1.9	36	82	8	88	47	0	1	51	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
809978--810022	23	2.0	23	86	0	63	53	2	2	42	1.25
810357--810409	14	3.8	14	78	9	63	33	18	5	41	1.74
817209--817242	5	6.6	5	86	6	50	82	2	0	14	0.79
818634--818664	14	2.1	15	94	5	55	38	16	9	35	1.81
818684--818759	36	2.2	35	81	6	91	44	9	2	43	1.50
818769--818846	14	5.9	14	75	17	85	42	8	6	42	1.62
818780--818899	24	4.9	24	73	16	104	40	10	4	44	1.59
818769--818869	52	1.9	52	94	4	177	41	8	5	43	1.60
818836--818897	22	2.7	22	82	9	63	40	12	3	43	1.59
832321--832613	36	7.8	36	73	15	186	44	11	3	41	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15