genome.fa.s8964.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008964.1 Hibiscus syriacus cultivar Beakdansim tig00112305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2156694

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  10  of  11  ( 1293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1708074--1708252	92	1.9	92	89	2	279	33	22	12	31	1.91
1708206--1708254	20	2.5	20	96	0	89	30	24	10	34	1.89
1708168--1708474	118	2.7	116	82	6	356	34	23	12	29	1.92
1708458--1708495	20	1.9	20	88	0	58	21	23	18	36	1.95
1708701--1708776	21	3.6	21	92	0	116	25	13	27	34	1.93
1709680--1709733	7	7.7	7	100	0	108	29	14	42	12	1.83
1710637--1710667	2	15.5	2	100	0	62	51	0	0	48	1.00
1712931--1713020	42	2.1	42	87	4	128	26	15	14	43	1.85
1716727--1716766	20	2.0	20	85	0	53	45	7	20	27	1.78
1718233--1718356	60	2.1	60	81	6	144	31	23	4	40	1.75
1719754--1719802	24	2.0	24	88	7	73	20	24	14	40	1.89
1721717--1721741	10	2.5	10	100	0	50	0	8	20	72	1.10
1722673--1722796	60	2.1	60	82	8	146	45	5	19	29	1.73
1730707--1730772	21	3.1	21	91	0	105	22	12	31	33	1.91
1742105--1742176	3	24.0	3	74	5	65	37	1	0	61	1.05
1743414--1743453	21	1.9	21	85	10	55	32	5	0	62	1.17
1743413--1743459	21	2.2	20	79	17	51	27	4	2	65	1.22
1744501--1744569	28	2.5	26	79	6	75	33	4	1	60	1.25
1747665--1747695	15	2.1	15	93	0	53	83	0	16	0	0.64
1753141--1753295	76	2.1	75	92	1	256	29	18	21	29	1.97
1754472--1754529	22	2.6	22	94	0	98	31	17	15	36	1.91
1755188--1755431	72	3.3	72	86	4	317	26	20	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1755472--1755786	123	2.7	116	82	9	347	38	14	21	25	1.92
1755836--1756154	139	2.3	138	83	4	396	39	13	18	28	1.89
1756085--1756144	17	3.4	17	68	17	50	50	8	23	18	1.74
1756376--1756471	3	32.0	3	76	4	86	39	1	0	59	1.04
1756382--1756471	33	2.7	31	86	6	108	41	1	0	57	1.06
1757701--1757740	21	1.9	21	85	10	55	32	5	0	62	1.17
1757872--1757903	2	16.0	2	93	0	55	53	0	0	46	1.00
1758070--1758285	118	1.9	114	80	8	258	39	9	8	42	1.68
1760014--1760060	24	2.0	24	82	0	58	38	21	19	21	1.94
1760058--1760152	23	4.1	23	81	0	118	34	25	18	21	1.96
1764167--1764212	21	2.4	19	85	10	58	28	13	26	32	1.93
1764656--1764843	44	4.3	44	90	0	268	42	12	18	26	1.86
1764827--1764880	25	2.2	25	100	0	108	40	9	18	31	1.82
1764782--1764921	69	2.0	69	84	0	181	42	10	18	27	1.83
1764733--1764946	113	1.9	113	85	1	295	43	11	18	26	1.84
1765785--1766185	200	2.0	198	95	4	727	29	21	22	26	1.99
1768366--1768674	44	7.0	44	89	0	447	41	13	21	23	1.88
1770604--1770642	18	2.2	18	95	0	69	43	7	15	33	1.75
1772720--1772765	23	2.0	23	91	8	76	84	0	2	13	0.71
1772721--1772765	8	5.8	8	92	7	67	86	0	2	11	0.65
1793158--1793214	24	2.4	24	76	2	62	33	19	21	26	1.97
1793202--1793293	23	4.0	23	85	0	121	33	25	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1793940--1793978	21	1.9	21	89	5	62	28	25	5	41	1.77
1798292--1798396	37	2.8	37	82	0	129	42	13	13	30	1.82
1798754--1798788	18	2.0	17	88	5	52	25	5	2	65	1.28
1802945--1803481	183	2.9	183	94	0	941	27	20	21	30	1.98
1804626--1804781	71	2.1	76	85	10	209	28	19	11	40	1.87
1804626--1804832	71	2.8	71	81	11	174	27	18	13	41	1.87
1804811--1804963	39	3.6	39	69	21	119	27	22	13	36	1.91
1804866--1805183	104	3.1	104	90	1	480	30	20	11	36	1.89
1805084--1805154	36	2.0	36	88	0	106	25	23	16	33	1.96
1805358--1805931	105	5.5	105	90	3	833	34	25	17	22	1.96
1806951--1806993	18	2.5	17	85	7	61	25	4	2	67	1.22
1808856--1808959	50	2.1	50	94	0	181	20	8	23	48	1.77
1813402--1813455	19	2.7	19	81	18	65	37	16	16	29	1.91
1813834--1814174	55	6.2	55	83	3	411	33	12	17	36	1.86
1813812--1814174	109	3.3	109	83	2	426	33	11	16	37	1.85
1813855--1814171	164	1.9	163	89	3	494	34	11	16	37	1.86
1826679--1826718	21	1.9	21	85	10	55	35	10	2	52	1.48
1832306--1832629	45	7.2	45	91	0	418	28	24	11	35	1.90
1832665--1832819	81	1.9	81	86	0	220	31	20	13	34	1.92
1832753--1833223	67	7.0	67	89	0	692	28	25	14	31	1.95
1833432--1833596	57	2.9	56	81	6	197	38	15	10	35	1.82
1838924--1839146	95	2.3	95	80	3	243	32	17	24	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1839600--1839838	90	2.7	90	82	5	295	42	8	17	31	1.79
1839600--1839816	45	4.8	45	86	2	265	43	8	17	30	1.79
1839600--1839859	45	5.8	45	84	5	231	43	8	16	31	1.77
1840667--1840725	2	29.5	2	100	0	118	49	0	0	50	1.00
1842479--1842787	45	6.9	45	84	2	352	30	23	10	35	1.89
1842493--1842788	90	3.3	90	85	1	389	29	22	10	36	1.89
1842479--1842787	135	2.3	135	84	2	397	30	23	10	35	1.89
1842822--1842970	81	1.8	81	94	0	262	31	22	9	36	1.86
1842910--1843037	68	1.9	67	86	1	184	29	25	10	34	1.90
1843079--1843333	67	3.9	66	86	4	372	26	26	14	32	1.95
1843070--1843330	130	2.0	130	91	0	423	27	26	14	32	1.95
1843284--1843381	50	2.0	50	93	0	169	26	27	11	34	1.90
1843600--1843780	57	3.2	57	81	3	211	38	15	9	36	1.80
1844131--1844182	19	2.5	21	77	20	56	28	17	19	34	1.94
1847051--1847197	27	5.5	27	78	9	158	36	17	21	25	1.94
1847043--1847197	53	2.9	53	82	3	186	35	18	20	26	1.95
1847050--1847215	54	3.1	52	80	4	188	36	16	19	27	1.93
1856037--1856097	24	2.5	23	76	7	59	34	16	16	32	1.91
1857254--1857282	15	2.0	15	93	6	51	0	20	3	75	0.94
1867128--1867173	18	2.5	20	79	13	53	65	13	0	21	1.26
1868729--1868797	2	35.0	2	88	2	104	49	2	1	46	1.25
1872511--1872549	20	2.0	20	89	0	60	33	10	23	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1875538--1875599	17	3.6	17	80	2	61	41	9	6	41	1.63
1876114--1876151	20	2.0	20	85	10	53	34	2	2	60	1.24
1886079--1886249	46	3.8	46	93	2	276	36	7	22	33	1.81
1888967--1889018	21	2.5	21	100	0	104	38	17	11	32	1.85
1889104--1889160	22	2.6	22	86	10	89	35	14	17	33	1.90
1889225--1889271	22	2.2	20	85	7	58	31	14	29	23	1.95
1889680--1889856	45	3.9	45	89	2	259	37	10	22	29	1.87
1892727--1892779	27	2.0	27	96	0	97	41	28	3	26	1.73
1896951--1897002	27	1.9	27	100	0	104	40	23	7	28	1.82
1897968--1898017	20	2.5	19	75	9	55	26	12	10	52	1.70
1899999--1900053	24	2.4	22	78	9	56	36	14	16	32	1.89
1901157--1901213	27	2.1	27	100	0	114	40	24	8	26	1.84
1904560--1904870	45	6.9	45	86	2	392	31	19	9	39	1.84
1904548--1904870	135	2.4	136	86	4	442	31	19	9	39	1.83
1913672--1913707	16	2.3	15	90	4	54	47	5	5	41	1.50
1914782--1914836	21	2.6	21	94	0	92	18	21	29	30	1.97
1915019--1915073	21	2.6	21	94	0	92	18	21	29	30	1.97
1915040--1915103	33	1.9	33	87	0	92	17	21	28	32	1.96
1915018--1915128	54	2.1	54	94	0	195	19	21	27	31	1.98
1915073--1915279	21	10.0	21	72	13	160	22	20	21	35	1.96
1915098--1915279	42	4.4	42	94	1	314	21	20	21	35	1.96
1916128--1916358	42	5.5	42	95	0	408	35	24	19	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1916132--1916385	21	12.3	19	69	15	130	35	24	19	20	1.96
1916381--1916429	21	2.3	21	89	0	71	18	20	28	32	1.96
1920530--1920585	26	2.2	26	87	3	87	28	5	12	53	1.60
1921118--1921148	2	15.5	2	100	0	62	48	0	0	51	1.00
1922055--1922100	22	2.1	22	96	4	85	19	10	32	36	1.87
1924863--1924899	19	1.9	19	88	0	56	40	8	16	35	1.78
1931835--1931962	51	2.5	51	78	2	123	17	34	25	21	1.96
1932138--1932171	17	1.9	17	88	5	50	29	8	2	58	1.43
1937747--1937781	12	2.8	12	91	4	52	62	5	2	28	1.32
1938038--1938164	51	2.5	50	79	8	130	29	27	29	14	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11