genome.fa.s8964.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008964.1 Hibiscus syriacus cultivar Beakdansim tig00112305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2156694

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  7  of  11  ( 1293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1179456--1179498	20	2.2	20	95	0	77	46	18	16	18	1.84
1179512--1179550	20	2.0	20	100	0	78	43	25	15	15	1.86
1182001--1182025	9	2.8	9	100	0	50	0	24	0	76	0.80
1182375--1182408	12	2.8	12	90	0	50	14	0	29	55	1.40
1183153--1183224	19	3.7	19	81	7	72	25	12	23	38	1.90
1183153--1183244	40	2.3	39	83	5	105	23	14	23	38	1.92
1183172--1183258	20	4.3	20	81	10	90	19	14	27	37	1.91
1183172--1183283	40	2.8	40	84	10	142	19	14	26	39	1.90
1183552--1183656	31	3.4	30	79	9	95	32	17	19	31	1.94
1185783--1187146	199	6.8	199	88	2	1799	38	14	15	31	1.87
1185783--1187146	597	2.3	600	88	2	2012	38	14	15	31	1.87
1187033--1187071	20	2.0	19	85	5	51	46	10	15	28	1.78
1188700--1188747	19	2.5	19	96	0	87	31	6	10	52	1.60
1191452--1192157	198	3.6	198	82	6	742	40	14	14	31	1.86
1192984--1193014	14	2.2	14	94	0	53	70	0	0	29	0.87
1193185--1193242	21	2.8	21	84	2	73	43	6	20	29	1.78
1193599--1193823	21	10.9	20	71	14	131	23	19	24	32	1.98
1193707--1193820	40	2.8	41	92	5	187	21	20	25	33	1.97
1193667--1193795	59	2.1	62	90	5	201	22	18	25	33	1.97
1193605--1193823	101	2.1	102	88	7	320	23	19	25	32	1.97
1193701--1193824	19	6.2	19	76	10	122	24	20	23	32	1.98
1193909--1193935	6	4.5	6	100	0	54	33	51	14	0	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1194478--1194741	42	6.3	42	81	11	294	36	24	17	20	1.94
1194478--1194664	61	3.0	61	89	3	284	36	23	18	21	1.95
1194484--1194712	21	11.0	21	71	17	167	37	23	17	21	1.94
1194478--1194755	124	2.3	123	81	11	295	36	24	17	21	1.95
1194758--1194802	21	2.1	21	95	0	81	17	20	33	28	1.95
1196124--1196178	23	2.3	25	78	12	62	60	1	3	34	1.25
1197333--1197399	30	2.3	29	82	7	82	37	22	10	29	1.88
1199813--1199906	46	2.0	46	100	0	188	32	12	19	35	1.89
1202041--1202076	17	2.1	17	100	0	72	44	27	0	27	1.55
1212422--1212577	60	2.6	59	85	6	199	37	3	24	35	1.72
1212869--1212923	2	27.5	2	100	0	110	50	0	0	49	1.00
1213173--1213296	60	2.1	60	87	0	176	29	15	17	37	1.91
1213513--1213551	18	2.2	18	90	0	60	30	20	17	30	1.96
1213646--1213767	3	40.7	3	98	0	235	65	0	0	33	0.98
1217071--1217109	17	2.4	17	91	4	62	30	2	5	61	1.31
1219349--1219396	13	3.6	14	80	8	55	18	2	10	68	1.28
1219431--1219501	34	2.1	34	87	10	101	19	2	14	63	1.42
1226376--1226434	31	1.9	31	85	0	82	25	20	10	44	1.83
1227402--1227439	16	2.3	16	95	4	67	31	15	5	47	1.68
1227591--1227620	9	3.3	9	90	0	51	60	3	0	36	1.14
1228245--1228272	10	2.8	10	100	0	56	21	32	39	7	1.80
1230197--1230222	13	2.0	13	100	0	52	53	30	7	7	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1231156--1231196	18	2.3	18	91	0	64	12	12	34	41	1.80
1231184--1231217	11	2.9	11	91	8	50	0	14	47	38	1.45
1231184--1231217	6	5.8	6	89	6	52	0	14	47	38	1.45
1231185--1231217	17	1.9	17	93	0	57	0	15	45	39	1.46
1231214--1231309	6	15.7	6	78	14	63	18	2	35	43	1.62
1231269--1231309	19	2.2	19	95	0	73	17	0	34	48	1.47
1232025--1232093	28	2.4	27	86	9	93	50	1	1	46	1.19
1232084--1232126	20	2.0	20	86	8	59	44	2	4	48	1.36
1232133--1232245	31	3.5	30	78	18	104	49	3	4	42	1.40
1232140--1232186	24	1.9	25	82	4	60	53	6	2	38	1.39
1232196--1232257	14	4.4	14	74	11	54	43	1	8	46	1.42
1232104--1232311	65	3.2	64	76	14	185	47	3	6	42	1.46
1232329--1232381	21	2.5	21	84	0	70	49	5	7	37	1.55
1232421--1232531	20	5.2	21	76	14	104	44	7	5	43	1.54
1232424--1232552	65	2.0	67	83	6	165	44	7	6	41	1.58
1232599--1232649	21	2.5	22	84	9	63	23	0	25	50	1.49
1233091--1233120	15	2.0	15	100	0	60	40	6	6	46	1.56
1233126--1233165	2	20.0	2	94	0	71	50	2	0	47	1.14
1233124--1233177	10	5.1	11	86	8	51	51	3	0	44	1.19
1233253--1233305	18	2.8	19	83	11	65	45	1	5	47	1.37
1235245--1235495	39	6.6	38	78	11	230	44	2	9	44	1.49
1243420--1243766	37	9.7	37	81	11	386	44	2	9	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1243494--1243679	99	1.9	101	89	4	297	46	2	7	44	1.44
1243611--1243670	11	5.1	11	70	21	50	45	1	8	45	1.43
1243525--1243659	64	2.2	63	88	6	195	45	2	8	43	1.45
1243449--1243730	136	2.1	136	87	6	414	45	2	8	43	1.47
1243796--1243834	21	1.9	21	89	5	62	15	5	0	79	0.90
1243819--1243848	12	2.5	12	88	0	51	13	0	3	83	0.77
1244529--1244560	15	2.1	15	100	0	64	15	18	53	12	1.73
1244533--1244567	15	2.3	15	90	0	52	14	22	51	11	1.74
1245123--1245183	23	2.6	22	82	12	61	22	6	1	68	1.21
1248638--1248684	21	2.2	21	96	0	85	19	25	19	36	1.95
1248675--1248740	20	3.5	17	84	11	60	34	25	18	21	1.96
1248690--1248800	19	5.7	20	82	7	113	36	21	14	27	1.92
1251996--1252030	6	5.8	6	86	0	52	60	20	2	17	1.49
1251997--1252037	18	2.3	18	95	0	73	56	24	2	17	1.53
1252483--1252532	25	2.0	25	96	0	91	26	8	22	44	1.80
1252919--1252955	18	2.1	18	89	0	56	32	5	10	51	1.60
1252911--1252963	24	2.2	24	86	0	70	35	3	13	47	1.61
1253225--1253311	39	2.2	39	97	0	165	47	20	14	17	1.83
1253529--1253569	20	2.0	20	85	0	55	43	21	14	19	1.87
1253665--1253805	61	2.2	63	83	8	171	50	17	1	31	1.54
1257496--1257527	13	2.5	13	94	0	55	78	12	6	3	1.06
1257736--1257827	42	2.2	43	98	2	177	25	4	38	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1257937--1257995	20	3.0	20	77	7	66	25	13	27	33	1.93
1261551--1261644	3	32.0	3	79	12	106	32	2	1	63	1.13
1263289--1263554	144	1.9	143	82	7	344	38	7	7	46	1.60
1264021--1264107	28	3.0	28	72	6	66	31	6	1	60	1.30
1264033--1264090	28	2.1	27	84	6	73	32	5	1	60	1.29
1264036--1264107	29	2.4	30	79	9	85	33	5	1	59	1.29
1273393--1273443	21	2.5	20	90	6	75	35	19	9	35	1.85
1273803--1274255	113	4.0	111	84	7	536	38	16	18	26	1.92
1274065--1274119	17	3.1	17	68	27	51	47	9	23	20	1.78
1274187--1274250	17	3.2	20	63	20	53	43	9	21	25	1.82
1274614--1274682	3	23.0	3	77	14	63	37	1	0	60	1.06
1274618--1274682	26	2.5	27	87	5	89	38	1	0	60	1.07
1276135--1276193	19	3.2	18	76	21	59	23	1	5	69	1.18
1276293--1276586	149	1.9	149	84	9	391	38	6	6	48	1.56
1283674--1283837	90	1.8	89	96	1	301	36	9	6	47	1.62
1285405--1285429	8	3.1	8	100	0	50	36	16	12	36	1.85
1286642--1286684	16	2.7	16	88	0	68	53	9	0	37	1.33
1286642--1286683	8	5.2	8	77	11	50	54	9	0	35	1.33
1287139--1287315	90	2.0	89	92	3	293	37	10	6	45	1.65
1307619--1307661	23	1.9	22	85	4	59	25	9	2	62	1.37
1307955--1308002	21	2.3	21	82	10	64	22	8	8	60	1.52
1320108--1320143	14	2.6	14	90	0	54	27	13	0	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1320121--1320188	14	4.8	14	71	16	50	19	11	1	67	1.29
1326627--1326759	27	5.1	27	78	15	147	36	18	14	31	1.90
1326618--1326759	50	2.8	50	89	5	205	33	16	14	34	1.90
1326862--1326903	21	2.0	21	100	0	84	28	19	28	23	1.98
1329293--1329460	60	2.8	61	76	7	148	30	23	5	41	1.76
1330169--1330210	21	2.0	21	81	9	50	52	9	9	28	1.65
1330594--1330669	24	3.1	24	84	1	62	39	22	15	22	1.92
1331460--1331579	31	3.9	31	76	10	111	26	28	29	15	1.96
1332292--1332362	22	3.2	22	75	0	70	35	21	22	21	1.96
1335202--1335592	45	8.7	45	90	0	611	21	21	12	44	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11