genome.fa.s8964.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008964.1 Hibiscus syriacus cultivar Beakdansim tig00112305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2156694

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  9  of  11  ( 1293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1543111--1543521	160	2.6	161	83	3	524	28	20	11	39	1.88
1543685--1543800	55	2.1	55	85	6	155	29	21	16	32	1.95
1545106--1545562	54	8.5	54	85	2	571	31	17	18	32	1.94
1552088--1552554	54	8.8	54	79	6	481	31	17	17	34	1.93
1552088--1552554	108	4.4	107	83	4	531	31	17	17	34	1.93
1552436--1552531	45	2.1	45	88	3	140	29	14	19	36	1.92
1552905--1552945	19	2.2	19	86	0	55	29	19	14	36	1.92
1562726--1562817	46	2.0	46	100	0	184	43	15	15	26	1.85
1562911--1562974	19	3.3	19	78	4	65	32	18	15	32	1.93
1562913--1562971	20	3.0	20	80	2	57	32	18	15	33	1.92
1563555--1563588	17	2.0	17	88	0	50	26	2	2	67	1.19
1564654--1564686	17	2.0	17	88	5	50	42	0	0	57	0.98
1567472--1567546	37	2.0	38	84	2	98	25	18	26	29	1.98
1569274--1569328	20	2.7	19	81	13	65	36	16	23	23	1.94
1569749--1569970	59	3.8	59	86	2	297	31	12	22	33	1.91
1570153--1570411	68	3.8	67	89	1	365	31	13	24	30	1.93
1570153--1570411	136	1.9	136	89	1	403	31	13	24	30	1.93
1570430--1570792	79	4.6	79	87	2	543	37	11	22	28	1.88
1570430--1570782	155	2.3	157	89	1	539	37	10	22	29	1.88
1579335--1579487	80	1.9	81	80	10	177	44	6	5	43	1.52
1584004--1584064	31	2.0	31	93	0	104	24	1	36	37	1.66
1585672--1585750	26	3.1	26	94	1	142	20	15	30	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1589032--1589070	15	2.5	15	83	4	51	74	7	17	0	1.05
1593780--1593878	37	2.7	37	90	0	153	27	18	18	36	1.94
1594685--1594750	22	3.1	22	80	4	82	18	22	18	40	1.91
1598585--1598686	37	2.8	37	89	0	159	28	16	19	35	1.94
1598657--1598719	31	2.0	31	85	11	85	23	19	22	34	1.96
1599381--1599422	21	2.0	22	85	4	59	26	11	30	30	1.92
1599464--1599519	22	2.7	22	81	8	64	25	17	14	42	1.87
1601660--1601692	4	8.5	4	86	6	50	75	0	0	24	0.80
1602188--1602236	17	2.6	20	78	12	59	48	0	0	51	1.00
1606783--1607185	198	2.0	201	98	1	785	42	13	20	23	1.88
1609181--1609262	42	2.0	42	87	0	119	30	17	25	26	1.97
1610088--1610130	22	2.0	22	100	0	86	32	13	9	44	1.76
1610764--1610908	45	3.2	45	68	21	122	43	14	20	21	1.87
1617892--1617980	42	2.1	41	89	2	133	22	22	21	33	1.97
1617846--1618252	197	2.1	196	91	0	661	30	17	18	33	1.94
1618863--1618966	42	2.5	41	80	3	118	24	22	21	32	1.98
1618021--1619869	260	7.2	259	85	4	2344	33	16	16	33	1.92
1619357--1619453	42	2.3	41	78	5	106	21	22	22	32	1.98
1618692--1619677	494	2.0	493	88	3	1455	33	16	16	33	1.92
1619637--1619716	41	1.9	42	87	2	117	23	21	17	37	1.94
1620031--1620425	44	9.0	44	81	4	388	22	14	19	42	1.88
1620031--1620425	88	4.5	88	82	5	437	22	14	19	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1620232--1620473	130	1.9	129	80	2	288	22	16	19	41	1.90
1621111--1621643	134	4.0	134	84	3	678	29	18	18	33	1.95
1621747--1621787	3	13.7	3	85	10	57	29	2	0	68	1.03
1624233--1624261	11	2.5	12	94	5	51	37	0	0	62	0.96
1628713--1628919	95	2.2	95	80	6	222	30	14	24	30	1.94
1628882--1628936	22	2.6	21	83	8	76	36	14	25	23	1.93
1629427--1629776	45	7.8	45	86	1	371	39	9	21	29	1.84
1629335--1629502	79	2.1	79	88	0	255	37	10	25	26	1.89
1629466--1629784	90	3.5	90	85	4	437	40	8	19	31	1.82
1629427--1629771	135	2.6	135	87	0	485	39	9	21	29	1.85
1630294--1630339	13	3.5	13	78	0	56	28	17	19	34	1.94
1630317--1630482	85	2.0	85	80	7	194	31	19	16	31	1.95
1637670--1637701	17	1.9	16	93	6	55	28	0	21	50	1.49
1638250--1638297	18	2.7	18	93	3	80	31	8	31	29	1.87
1638660--1639266	267	2.4	244	84	12	812	40	19	13	26	1.89
1642635--1642665	12	2.6	12	89	0	53	19	48	19	12	1.81
1644705--1644814	33	3.4	33	97	1	195	45	13	7	33	1.71
1644809--1644850	21	2.0	21	90	0	66	50	7	11	30	1.66
1647435--1647498	23	2.8	23	80	0	74	50	7	9	32	1.64
1652067--1652105	19	2.1	19	85	9	53	43	15	7	33	1.75
1653997--1654021	13	1.9	13	100	0	50	56	0	0	44	0.99
1654706--1654748	20	2.2	19	87	4	59	34	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1656125--1656234	29	3.4	29	67	23	85	22	10	9	57	1.61
1656109--1656246	69	2.0	69	100	0	276	21	13	10	55	1.67
1659159--1659377	113	1.9	113	88	0	330	34	23	10	30	1.89
1659479--1659516	20	1.9	20	88	0	58	34	13	23	28	1.92
1659587--1659709	41	3.0	42	71	13	119	26	13	27	33	1.93
1659651--1659707	21	2.8	20	73	5	60	29	15	24	29	1.96
1660259--1660420	82	2.0	82	100	0	324	38	12	8	40	1.74
1660552--1660659	22	5.0	21	80	11	130	19	38	27	13	1.90
1660552--1660659	45	2.5	42	85	10	139	19	38	27	13	1.90
1664045--1664108	21	3.0	21	79	4	67	17	40	26	15	1.89
1667643--1667670	2	14.0	2	100	0	56	50	0	0	50	1.00
1669977--1670016	21	1.9	21	89	0	62	55	5	7	32	1.50
1673801--1673905	22	4.8	22	79	6	106	31	28	20	19	1.97
1679474--1679535	20	3.0	20	80	11	72	24	32	27	16	1.96
1680811--1680858	19	2.5	20	82	3	62	52	6	12	29	1.63
1682303--1682361	22	2.9	20	78	14	75	18	30	30	20	1.96
1683323--1683356	17	2.1	16	88	5	50	76	0	11	11	1.02
1683289--1683373	36	2.3	37	76	11	86	71	2	18	7	1.19
1683327--1683378	21	2.4	21	81	9	61	75	0	17	7	1.03
1684047--1684115	28	2.5	28	100	0	138	40	27	4	27	1.75
1685359--1685819	54	8.7	54	79	8	371	32	10	17	39	1.83
1685359--1685860	108	4.7	107	76	11	433	32	10	17	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1685359--1685819	154	2.9	159	81	6	476	32	10	17	39	1.83
1685912--1686018	42	2.6	41	83	4	133	23	23	24	28	1.99
1686001--1686513	144	3.6	144	89	1	710	26	26	15	30	1.96
1686540--1686794	73	3.5	72	83	4	314	31	20	11	36	1.88
1686576--1686762	36	5.1	36	66	8	110	30	22	10	36	1.88
1687208--1687871	139	4.8	139	81	8	641	34	18	21	25	1.96
1687853--1687956	42	2.5	42	87	7	142	28	23	21	26	1.99
1687853--1687957	41	2.5	41	87	7	142	28	22	20	27	1.99
1688218--1688280	25	2.5	25	84	2	81	31	38	12	17	1.87
1688396--1688546	77	2.0	77	85	2	205	26	41	11	20	1.86
1694192--1694230	2	19.5	2	100	0	78	51	0	0	48	1.00
1694377--1694405	14	2.0	15	93	6	51	44	0	0	55	0.99
1694664--1694786	38	3.0	38	71	22	104	45	8	2	43	1.46
1696045--1696083	6	6.7	6	97	2	71	0	17	51	30	1.46
1696164--1696248	41	2.0	41	84	6	109	38	23	20	17	1.93
1696189--1696252	21	3.1	21	70	4	67	39	26	17	17	1.91
1696281--1696345	20	3.2	20	72	10	60	33	29	20	16	1.95
1696288--1696390	41	2.5	41	91	0	161	37	25	19	17	1.93
1696288--1696394	21	5.2	21	67	4	83	38	26	18	16	1.92
1698821--1698847	2	13.5	2	100	0	54	51	0	0	48	1.00
1699273--1699395	38	3.0	38	71	22	104	45	8	2	43	1.46
1700153--1700191	6	6.3	6	86	13	53	33	51	15	0	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1700155--1700183	14	2.1	14	100	0	58	34	51	13	0	1.42
1700678--1700716	6	6.7	6	97	2	71	0	17	51	30	1.46
1700800--1700881	41	2.0	41	83	7	103	39	24	19	17	1.92
1700825--1700969	41	3.4	41	74	15	148	33	25	20	20	1.97
1700912--1700998	21	4.2	21	77	2	86	35	28	17	18	1.93
1703993--1704118	59	2.1	59	86	4	173	30	13	6	50	1.66
1707149--1707306	20	7.8	20	77	2	154	15	19	23	41	1.90
1707156--1707306	61	2.5	61	94	0	257	15	19	24	41	1.90
1707859--1707974	21	5.7	21	85	4	139	34	30	12	23	1.91
1707966--1708469	113	4.6	112	71	16	376	33	24	13	29	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11