genome.fa.s8964.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008964.1 Hibiscus syriacus cultivar Beakdansim tig00112305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2156694

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317386--317452	2	33.5	2	90	0	107	52	2	0	44	1.16
317837--317929	37	2.5	37	89	0	132	31	11	15	41	1.83
318632--319403	106	7.3	106	94	0	1294	23	18	24	33	1.97
319342--319443	43	2.4	43	90	3	152	17	18	23	40	1.91
319130--319657	255	2.1	254	94	1	923	22	18	24	34	1.96
319236--319552	149	2.1	149	93	0	535	22	18	23	35	1.96
319385--320293	106	8.6	106	95	0	1577	23	18	24	33	1.96
318812--319975	572	2.0	573	94	0	2042	22	18	25	33	1.96
320232--320333	43	2.4	43	91	0	159	17	18	24	39	1.92
320126--320442	149	2.1	149	94	0	544	22	18	24	34	1.96
320275--320840	106	5.3	106	94	0	934	22	18	24	34	1.96
320020--320552	255	2.1	253	94	0	778	22	18	24	34	1.96
322398--322472	20	3.8	20	73	16	59	1	12	6	80	0.97
322419--322478	16	3.8	16	81	14	63	0	13	5	81	0.84
322409--322478	35	2.1	31	82	15	79	0	12	5	81	0.86
322419--322478	32	1.9	32	86	10	88	0	13	5	81	0.84
322396--322470	7	10.7	7	76	9	55	1	12	6	80	0.97
325869--325896	5	5.6	5	100	0	56	82	0	0	17	0.68
327750--327846	37	2.6	37	85	0	140	31	12	15	40	1.84
327962--328036	35	2.1	36	92	2	125	30	0	24	45	1.53
331558--331838	37	7.7	36	93	2	422	45	3	7	43	1.49
331558--331838	74	3.8	74	94	1	487	45	3	7	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331557--331838	147	1.9	144	94	3	494	46	3	7	42	1.49
331783--331892	54	2.0	54	86	6	152	44	3	10	41	1.55
331838--331946	37	2.9	38	80	6	114	44	6	9	39	1.62
331958--332023	29	2.3	29	79	7	73	16	0	6	77	0.96
331983--332024	14	3.2	14	77	19	54	14	0	4	80	0.86
331987--332025	19	2.2	17	86	13	53	17	0	2	79	0.84
332500--332551	24	2.2	24	80	12	63	65	25	7	1	1.30
345285--345683	37	11.2	37	81	13	446	45	2	7	44	1.44
345456--345662	100	2.0	104	88	5	316	47	1	7	43	1.42
345530--345590	26	2.3	26	91	5	97	49	1	8	40	1.42
345493--345631	64	2.1	67	84	10	182	46	1	8	43	1.43
345530--345590	27	2.3	27	91	5	99	49	1	8	40	1.42
345566--345659	41	2.2	43	83	11	131	48	1	5	44	1.32
345735--345817	3	26.7	3	92	4	130	31	2	0	66	1.05
348043--348099	26	2.2	26	93	0	96	19	24	40	15	1.90
350572--350603	16	2.0	17	88	11	50	15	40	31	12	1.85
352271--352523	87	2.9	87	95	1	447	42	9	13	33	1.78
352608--352650	21	2.1	21	86	4	61	34	9	11	44	1.73
354249--354277	4	7.2	4	100	0	58	48	27	0	24	1.51
355475--355540	33	2.0	33	90	0	105	22	48	0	28	1.51
355574--355624	21	2.4	21	86	0	66	21	27	11	39	1.88
355588--355638	21	2.4	21	93	0	84	17	31	7	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358045--358105	20	3.1	19	77	13	61	19	13	13	54	1.71
358332--358361	10	3.0	10	100	0	60	40	10	10	40	1.72
366878--367145	146	1.8	145	82	2	340	20	30	16	32	1.94
367441--367471	7	4.6	7	92	8	55	0	9	0	90	0.46
367440--367476	13	2.8	13	91	0	56	2	10	0	86	0.67
367697--367752	3	18.7	3	89	7	78	67	1	0	30	1.01
367998--368110	49	2.3	48	82	10	124	32	15	23	28	1.95
368029--368514	113	4.3	113	89	0	695	31	16	23	27	1.96
368412--368579	65	2.6	65	80	3	203	32	17	22	27	1.96
376475--376518	22	2.0	22	100	0	88	31	22	13	31	1.93
378861--379330	113	4.2	113	88	4	673	31	15	24	28	1.95
379116--379441	177	1.8	178	92	0	555	30	16	24	29	1.96
379241--379395	65	2.4	64	92	3	256	29	17	24	29	1.97
388709--388754	20	2.3	20	92	0	74	6	36	32	23	1.81
388861--389154	145	2.0	145	86	4	405	20	30	17	30	1.96
394140--394206	29	2.3	29	97	0	125	29	14	4	50	1.63
394140--394215	29	2.6	29	89	4	109	30	18	3	47	1.67
394416--394461	16	3.0	15	81	12	58	32	32	6	28	1.83
394500--394535	16	2.2	16	90	0	54	27	11	5	55	1.57
397616--397691	29	2.6	29	87	4	109	31	17	5	46	1.70
397657--397925	130	2.0	134	85	3	366	22	15	15	46	1.83
398125--398160	16	2.2	16	90	0	54	27	11	5	55	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399000--399037	16	2.3	17	90	4	60	28	5	2	63	1.30
401558--401678	42	2.9	41	76	7	118	34	17	21	26	1.95
401544--401678	42	3.2	42	76	10	114	34	17	20	27	1.95
401690--401799	43	2.6	43	79	2	114	30	14	21	33	1.93
401812--401999	44	4.3	44	81	1	191	30	15	22	30	1.95
409817--409905	40	2.2	40	91	0	142	29	21	20	29	1.98
409869--410173	83	3.7	82	68	10	215	31	20	16	31	1.95
409815--410174	166	2.2	164	88	4	512	31	21	16	31	1.95
410077--410256	41	4.3	41	74	12	161	33	24	13	28	1.93
410079--410286	83	2.5	82	87	3	285	32	23	14	29	1.94
410132--410298	83	2.0	83	94	2	291	31	24	15	28	1.96
411361--411405	22	2.0	22	91	0	72	33	17	8	40	1.81
414420--414492	11	6.2	11	74	12	56	75	1	5	17	1.07
414520--414566	15	3.0	16	78	12	53	78	0	8	12	0.95
414511--414552	13	3.2	13	80	19	52	76	0	11	11	1.03
414511--414564	24	2.2	26	86	6	76	75	0	9	14	1.03
414512--414553	12	3.3	12	81	18	50	73	0	11	14	1.09
415936--416684	106	7.1	106	88	2	1091	22	18	26	33	1.97
416921--417286	37	10.4	36	69	14	194	39	13	19	27	1.90
416968--417232	102	2.6	102	94	0	451	38	13	20	27	1.90
417655--417727	32	2.3	32	80	4	85	32	24	15	27	1.95
418133--418176	22	2.0	22	90	0	70	25	15	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418825--418904	7	10.9	7	73	18	65	1	16	5	77	1.01
418839--418877	16	2.5	16	83	4	53	0	17	5	76	0.96
418827--418871	23	2.0	23	86	8	65	0	20	4	75	0.97
418838--418910	19	4.1	18	73	19	55	1	16	5	76	1.04
422528--422596	10	6.6	10	75	15	59	73	5	0	20	1.03
424554--424592	21	1.9	20	89	5	60	76	0	12	10	1.01
424853--424893	20	2.0	20	85	0	55	75	2	4	17	1.08
424925--424955	2	15.5	2	100	0	62	51	0	0	48	1.00
426283--426368	37	2.5	34	90	7	129	31	9	18	40	1.82
426386--426495	36	3.1	36	84	5	152	41	14	19	24	1.88
426509--426567	30	2.0	30	83	12	77	35	11	15	37	1.84
426553--426904	36	10.3	36	62	18	126	40	13	18	28	1.88
426651--426724	37	2.0	37	91	0	121	39	14	18	27	1.90
426535--426904	102	3.6	101	85	2	447	39	13	18	29	1.88
426996--427115	36	3.3	36	68	9	109	41	13	17	27	1.87
426943--427106	72	2.2	74	84	5	226	40	12	17	29	1.85
433817--433876	27	2.1	27	84	6	75	78	1	8	11	1.03
433820--433872	20	2.6	21	76	8	56	79	1	9	9	1.02
434140--434187	21	2.2	21	85	7	60	68	2	2	27	1.11
438877--438913	15	2.4	16	90	4	58	13	10	5	70	1.32
439268--439293	10	2.6	10	100	0	52	92	7	0	0	0.39
448884--449247	86	4.2	86	89	1	543	27	24	24	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449303--449853	85	6.5	85	88	2	752	35	20	18	25	1.95
450708--451069	36	9.9	36	83	10	407	45	4	5	44	1.48
450707--451049	73	4.7	74	82	13	381	46	4	5	44	1.47
450712--451049	111	3.1	108	84	8	413	45	4	5	44	1.47
451069--451127	3	21.0	3	75	19	56	25	0	3	71	1.02
451070--451129	5	11.4	5	87	5	59	23	0	3	73	0.98
453964--454037	3	24.0	3	91	5	105	63	0	0	36	0.95
454396--455071	114	6.0	114	90	3	1019	29	18	14	38	1.90
454394--455071	227	3.0	226	90	3	1026	29	18	14	38	1.90
455792--456025	83	2.7	88	85	7	309	38	22	13	26	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11