genome.fa.s8964.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008964.1 Hibiscus syriacus cultivar Beakdansim tig00112305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2156694

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1939969--1939999	16	1.9	16	93	0	53	35	9	48	6	1.62
1941232--1941307	15	5.3	15	72	15	70	53	2	1	42	1.23
1941231--1941322	42	2.2	42	98	1	177	51	4	2	42	1.34
1941315--1941354	20	2.0	21	90	5	64	37	0	2	60	1.11
1941319--1941372	28	1.9	28	85	7	74	37	0	1	61	1.07
1943465--1943954	245	2.0	244	98	1	946	35	18	28	17	1.94
1964061--1964104	22	2.0	22	86	0	61	29	13	25	31	1.94
1964433--1964761	55	6.0	55	85	2	432	33	20	19	26	1.96
1971373--1971678	53	5.9	53	82	6	349	23	25	19	31	1.98
1972115--1972354	42	5.8	42	70	6	168	32	22	17	27	1.96
1982282--1982358	22	3.5	22	92	0	127	12	22	37	27	1.91
1982282--1982380	44	2.2	44	85	3	128	13	22	38	26	1.90
1984782--1984834	20	2.7	20	85	8	72	37	16	28	16	1.91
1984884--1984928	20	2.1	22	88	8	67	28	15	22	33	1.95
1986579--1986709	63	2.0	64	97	2	246	17	24	22	35	1.95
1990342--1990388	19	2.5	19	89	0	76	29	14	17	38	1.89
1990850--1990891	17	2.6	16	78	10	50	73	0	11	14	1.09
1990846--1990895	25	2.0	26	84	4	66	74	0	14	12	1.09
1992846--1993123	83	3.4	82	81	8	316	35	20	16	26	1.94
2001529--2001693	60	2.8	60	77	3	170	33	23	5	37	1.78
2011390--2011522	45	2.9	45	88	1	194	33	20	6	39	1.79
2011638--2011759	59	2.1	59	85	3	165	29	24	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2013513--2013611	46	2.2	46	98	1	191	36	9	4	50	1.53
2015473--2015518	18	2.6	19	83	13	62	4	21	0	73	1.00
2015482--2015541	13	4.8	13	80	15	65	1	20	1	76	0.96
2015481--2015541	6	10.0	6	77	13	63	1	19	1	77	0.95
2015482--2015541	31	1.9	31	83	12	79	1	20	1	76	0.96
2019480--2019569	23	3.9	23	89	0	126	23	31	14	31	1.94
2020338--2020384	19	2.5	19	96	0	85	34	14	29	21	1.93
2022453--2022503	12	4.2	12	97	2	93	50	7	41	0	1.31
2023580--2023619	21	1.9	21	94	0	71	30	25	22	22	1.99
2024012--2024144	45	2.9	45	88	1	203	33	21	6	39	1.78
2024260--2024381	59	2.1	59	84	0	154	30	22	18	28	1.97
2024666--2024713	23	2.0	24	96	4	89	45	8	12	33	1.72
2026243--2026301	30	2.0	30	86	6	84	33	18	8	38	1.81
2027065--2027197	45	2.9	45	89	1	203	33	21	4	39	1.74
2029268--2029316	24	2.0	24	100	0	98	42	12	12	32	1.79
2030864--2030939	30	2.6	29	79	10	82	34	15	9	40	1.79
2037199--2037259	21	2.8	19	77	22	59	42	0	4	52	1.23
2037199--2037263	22	3.0	21	75	22	62	43	0	4	52	1.22
2037228--2037330	42	2.5	41	83	13	122	50	1	0	46	1.19
2037268--2037345	15	5.4	15	66	9	63	50	2	0	47	1.15
2038197--2038285	23	4.0	22	79	7	90	34	28	21	15	1.94
2038228--2038293	23	2.9	23	86	0	87	33	27	24	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2040492--2040570	21	3.8	21	87	0	113	22	13	30	32	1.93
2041249--2041282	16	2.1	17	88	5	52	38	2	17	41	1.65
2044697--2044775	21	3.8	21	84	0	95	20	18	27	32	1.96
2049599--2049626	14	2.0	14	100	0	56	35	7	21	35	1.81
2049955--2050089	53	2.5	53	87	3	191	28	21	17	31	1.96
2049990--2050838	55	15.6	55	88	1	1124	33	19	19	27	1.96
2053141--2053187	2	23.5	2	100	0	94	51	0	0	48	1.00
2055818--2056193	55	6.9	53	85	2	164	32	18	19	29	1.95
2055946--2056305	55	6.6	55	91	0	578	36	18	18	26	1.94
2055939--2056346	110	3.7	110	88	0	586	36	19	17	26	1.94
2055939--2056346	165	2.5	163	88	2	595	36	19	17	26	1.94
2056637--2056773	68	2.0	68	92	0	229	28	14	27	29	1.95
2061972--2062172	99	2.0	100	99	0	395	43	7	12	35	1.73
2062161--2062325	60	2.7	60	75	10	165	42	5	20	32	1.74
2079362--2079425	27	2.4	27	85	10	80	26	20	17	35	1.94
2081041--2081641	54	11.1	54	86	1	821	36	21	16	24	1.94
2081236--2081321	27	3.2	27	65	12	77	34	20	18	25	1.96
2086461--2086616	54	2.9	54	81	3	188	33	19	19	27	1.96
2086468--2086665	108	1.8	108	79	4	229	33	19	18	28	1.95
2086495--2086735	54	4.5	54	76	4	175	34	17	18	29	1.94
2090891--2090978	30	2.9	30	77	12	83	40	7	17	34	1.78
2094137--2094698	162	3.5	162	86	2	765	37	21	15	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2094137--2094722	54	10.9	53	84	4	678	37	20	15	26	1.93
2098080--2098332	125	2.0	127	98	1	492	35	13	18	32	1.90
2099582--2100078	54	9.2	54	84	3	608	34	20	17	27	1.95
2099582--2100169	108	5.4	108	86	2	691	34	20	17	27	1.95
2099582--2100145	162	3.5	162	85	2	688	34	20	17	27	1.95
2100043--2100170	54	2.4	54	90	0	202	31	18	19	30	1.96
2102152--2102278	54	2.3	55	80	6	143	24	25	17	32	1.97
2117899--2118857	55	17.5	55	92	1	1514	34	11	19	34	1.88
2119085--2119171	45	1.9	45	85	0	120	40	12	21	25	1.89
2122801--2123123	117	2.8	117	80	3	375	23	21	14	39	1.91
2125344--2125453	19	5.8	19	68	20	54	5	19	0	74	1.06
2125364--2125477	10	10.2	10	67	20	57	5	17	0	76	1.02
2125352--2125431	33	2.4	33	79	8	83	5	20	0	75	0.99
2125364--2125433	23	3.1	22	84	10	72	5	17	0	77	0.96
2125347--2125475	50	2.5	50	82	9	152	5	18	0	75	1.04
2125352--2125475	21	5.4	22	72	21	85	4	19	0	75	1.04
2125388--2125480	28	3.5	27	72	24	99	4	18	1	76	1.01
2127306--2127349	18	2.4	18	96	0	79	22	38	0	38	1.55
2129253--2129310	30	1.9	30	96	0	107	44	17	12	25	1.83
2131330--2131385	28	2.0	28	92	0	94	32	14	10	42	1.80
2132917--2132981	31	2.1	31	97	0	121	18	20	30	30	1.96
2134689--2134723	13	2.6	14	86	13	56	40	5	8	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2136547--2136596	20	2.5	19	78	12	55	64	16	0	20	1.30
2142949--2142989	18	2.3	18	100	0	82	17	19	31	31	1.95
2148268--2148590	83	3.9	83	80	4	321	32	14	18	35	1.91
2148725--2148757	17	2.0	17	88	5	50	9	24	6	60	1.49
2152954--2153119	90	1.9	89	92	1	278	35	11	6	46	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!