genome.fa.s8964.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008964.1 Hibiscus syriacus cultivar Beakdansim tig00112305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2156694

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457378--457419	6	7.2	6	82	12	52	0	14	0	85	0.59
457380--457421	9	5.1	8	80	13	50	0	16	0	83	0.65
457383--457421	11	3.1	14	72	27	50	0	17	0	82	0.68
464691--464722	15	2.1	15	94	0	55	46	9	18	25	1.79
470157--470188	17	1.9	16	93	6	55	59	0	0	40	0.97
470195--470220	3	8.7	3	100	0	52	34	0	0	65	0.93
470491--470528	13	2.7	14	84	11	51	21	0	0	78	0.74
470534--470622	36	2.4	38	81	11	103	15	11	3	69	1.30
470623--470662	21	1.9	21	94	0	71	15	2	5	77	1.04
470579--470682	21	4.8	21	69	19	63	11	4	3	79	1.01
470582--470723	75	1.9	75	81	11	175	15	6	4	73	1.18
470786--470827	6	6.7	6	94	5	66	33	0	0	66	0.92
474569--474599	11	2.8	11	100	0	62	58	6	0	35	1.24
477029--477083	22	2.5	22	97	2	103	60	0	0	40	0.97
476985--477128	22	6.7	21	71	18	91	56	3	0	38	1.21
476985--477083	22	4.5	21	75	14	94	55	3	1	40	1.22
476985--477119	68	2.0	65	80	7	146	58	3	0	37	1.21
476985--477128	64	2.2	65	81	7	168	56	3	0	38	1.21
478120--478248	25	5.0	25	72	22	99	44	3	0	51	1.19
478887--478952	23	2.8	24	79	11	73	68	4	0	27	1.09
479185--479253	29	2.3	30	78	9	79	37	17	7	37	1.77
479334--479392	29	2.0	31	90	6	95	35	5	16	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479609--479650	21	2.0	21	95	0	75	23	21	28	26	1.99
480860--480907	19	2.5	20	82	3	62	52	6	12	29	1.63
482102--482161	30	2.0	31	87	6	88	36	6	15	41	1.73
482377--482417	20	2.0	21	90	4	66	24	21	26	26	2.00
484081--484124	19	2.3	18	80	7	52	50	6	9	34	1.61
489549--489610	32	1.9	32	87	6	90	30	17	4	46	1.69
490253--490289	5	7.2	5	90	3	56	16	0	2	81	0.81
501604--501637	17	2.0	17	94	0	59	79	0	0	20	0.73
510995--511139	64	2.2	64	84	6	168	31	18	21	28	1.97
525639--525682	6	7.2	6	82	12	54	79	2	15	2	0.93
532372--532473	23	4.3	24	79	10	104	77	4	13	3	1.08
532372--532475	6	16.5	6	70	15	50	76	4	14	3	1.09
533457--533790	139	2.4	139	85	1	445	31	28	16	23	1.96
533895--534089	107	1.8	107	85	2	275	35	24	14	26	1.93
535832--535857	9	2.9	9	100	0	52	11	11	7	69	1.37
535946--536082	32	4.2	32	77	8	123	30	16	3	48	1.63
537736--537790	21	2.6	21	100	0	110	36	16	21	25	1.94
538980--539029	24	2.0	26	84	11	68	34	0	2	64	1.05
539009--539056	16	2.9	16	75	19	53	39	0	0	60	0.97
538998--539055	18	3.3	17	81	11	64	36	0	1	62	1.06
539665--539694	2	15.0	2	100	0	60	50	0	0	50	1.00
542533--542603	13	5.5	13	69	24	60	28	2	32	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542528--542604	26	3.0	26	100	0	154	31	3	29	35	1.76
543604--543636	2	16.5	2	100	0	66	48	0	0	51	1.00
545125--545397	43	6.4	43	82	2	255	28	20	22	28	1.98
545279--545375	42	2.3	42	81	0	113	25	22	20	30	1.98
548761--549078	41	7.7	41	82	1	332	33	19	19	27	1.96
548761--549078	83	3.9	83	86	2	381	33	19	19	27	1.96
548808--549078	83	3.3	83	88	1	384	34	18	18	28	1.95
554632--554686	12	4.6	12	83	0	65	12	14	47	25	1.80
554684--554772	24	3.6	25	75	17	78	46	0	0	53	1.00
554742--554770	2	15.0	2	92	7	51	48	0	0	51	1.00
560167--560229	30	2.1	30	88	2	92	41	6	0	52	1.27
560193--560261	27	2.5	27	83	2	75	42	4	1	52	1.30
560241--560274	16	2.1	17	88	5	52	52	0	5	41	1.25
560263--560336	36	1.9	41	84	13	104	60	0	1	37	1.05
560303--560363	30	2.1	30	84	6	81	55	1	0	42	1.09
560348--560416	24	2.8	22	79	16	57	47	1	1	49	1.19
560411--560463	15	3.5	15	80	10	54	49	0	18	32	1.48
561060--561108	21	2.3	21	92	0	89	40	30	14	14	1.85
566969--567037	35	2.0	35	88	0	102	44	21	1	31	1.61
567048--567115	34	2.0	35	85	2	93	36	0	19	44	1.51
568493--568561	36	1.9	37	82	5	88	50	5	1	42	1.35
570152--570311	65	2.5	64	90	1	257	28	16	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570152--570359	65	3.2	64	83	6	233	27	16	23	32	1.96
576175--576299	21	5.8	21	74	17	96	24	19	26	30	1.98
579045--579083	19	2.1	19	100	0	78	30	38	10	20	1.86
582010--582048	18	2.2	18	100	0	78	30	0	30	38	1.58
592038--592113	30	2.6	29	76	13	82	72	1	17	9	1.17
592063--592114	22	2.4	20	79	17	59	71	0	21	7	1.11
593170--593980	55	14.7	55	84	6	708	30	17	24	27	1.97
601644--601682	15	2.6	15	87	0	60	38	10	30	20	1.86
605667--605727	23	2.7	22	92	2	95	22	32	26	18	1.97
607986--608211	22	10.5	22	82	5	302	40	0	10	48	1.44
609780--609835	29	1.9	29	88	0	85	55	10	3	30	1.51
611184--611223	2	20.5	2	94	5	73	50	0	0	50	1.00
615347--615431	43	2.0	44	85	2	118	51	3	2	42	1.31
616452--616487	2	18.0	2	94	0	63	47	0	0	52	1.00
618310--618339	2	15.0	2	100	0	60	50	0	0	50	1.00
619517--619586	29	2.4	28	88	6	104	32	20	15	31	1.94
620033--620084	25	2.0	26	85	3	70	34	5	3	55	1.42
622459--622491	4	8.8	4	87	12	52	75	0	24	0	0.80
622460--622490	7	4.3	7	92	8	53	74	0	25	0	0.82
623508--623538	4	7.8	4	100	0	62	48	25	0	25	1.52
625159--625216	18	3.3	18	92	2	91	31	3	48	17	1.64
625697--625783	23	3.8	23	83	1	104	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625766--625819	18	3.2	18	71	15	60	24	29	20	25	1.99
629375--629456	23	3.6	23	73	12	87	25	24	26	23	2.00
637595--637668	23	3.3	21	75	11	69	27	24	25	22	2.00
642917--642956	20	1.9	22	90	10	66	37	37	10	15	1.80
645277--645335	18	3.1	18	86	11	82	32	13	6	47	1.69
645556--645620	23	2.9	23	90	2	105	32	21	15	30	1.94
645618--645684	37	1.9	35	85	11	93	25	29	16	28	1.97
646140--646209	33	2.1	33	86	0	95	31	17	31	20	1.95
647791--647820	14	2.1	14	93	0	51	23	16	23	36	1.94
649632--649698	28	2.4	28	100	0	134	26	31	2	38	1.72
657998--658081	29	2.9	30	74	13	86	41	3	17	36	1.67
673411--673436	12	2.2	12	100	0	52	19	7	30	42	1.79
683295--683332	14	2.5	15	83	16	51	42	0	18	39	1.50
696364--696400	10	3.9	10	79	13	51	56	0	0	43	0.99
696638--696935	97	3.2	89	78	11	259	27	17	18	36	1.93
696684--696935	91	2.7	90	76	13	242	27	18	17	36	1.94
696993--697068	38	2.0	38	89	0	116	36	21	18	23	1.95
696991--697068	20	4.1	19	86	8	104	37	21	17	23	1.94
697001--697080	20	4.1	18	85	9	79	33	21	18	26	1.96
700177--700292	21	5.4	21	76	13	103	35	25	15	23	1.94
700163--700250	23	3.9	23	77	5	90	31	25	18	25	1.97
703936--704244	155	2.0	154	98	1	602	32	18	17	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721705--721744	13	3.0	13	82	7	53	37	2	0	60	1.11
722819--724070	620	2.0	620	93	0	2159	36	12	17	32	1.88
723744--724382	311	2.1	311	93	0	1091	35	12	20	31	1.90
723124--725002	931	2.0	931	95	0	3402	36	12	19	32	1.89
725084--725123	13	3.0	13	82	7	53	37	0	0	62	0.95
731074--731141	3	22.0	3	79	5	73	36	0	1	61	1.05
732703--733071	126	3.1	118	74	13	315	39	8	9	42	1.68
732884--733118	111	2.1	111	81	3	258	38	9	8	42	1.69
733552--733603	20	2.6	21	76	11	56	26	7	0	65	1.20
739902--740226	114	2.9	114	90	0	497	33	15	19	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11