genome.fa.s9572.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009572.1 Hibiscus syriacus cultivar Beakdansim tig00116937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2529503

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1477 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2503855--2503954	38	3.0	33	76	19	93	47	0	0	53	1.00
2504711--2504742	4	8.0	4	100	0	64	25	0	0	75	0.81
2505540--2505578	2	20.0	2	94	5	71	48	0	0	51	1.00
2507063--2507114	21	2.5	21	81	3	61	38	19	25	17	1.93
2507103--2507196	20	4.7	20	77	2	80	35	24	17	23	1.95
2507100--2507177	41	1.9	41	83	0	102	41	21	15	21	1.90
2507752--2507796	19	2.4	19	92	0	72	48	26	15	8	1.74
2507792--2507976	19	10.1	19	77	14	174	12	22	22	43	1.86
2507792--2507881	39	2.3	38	94	1	153	12	20	22	45	1.83
2507864--2507951	33	2.6	33	92	1	140	11	25	25	38	1.89
2507919--2507976	20	2.9	20	80	10	64	13	24	18	43	1.87
2509963--2510085	42	2.9	42	80	2	122	22	36	17	22	1.95
2510019--2510085	21	3.2	21	66	6	55	23	35	20	19	1.95
2511442--2511477	14	2.6	14	95	0	63	30	0	25	44	1.54
2511656--2511773	19	6.7	19	66	19	76	13	23	20	42	1.88
2511660--2511753	33	2.8	33	98	0	179	12	24	19	43	1.85
2514046--2514070	12	2.1	12	100	0	50	0	28	0	72	0.86
2515298--2515334	14	2.6	14	86	0	56	48	21	0	29	1.50
2517252--2517309	14	3.9	14	79	16	71	48	25	17	8	1.75
2517236--2517326	32	2.8	33	94	3	166	47	23	18	10	1.80
2517178--2517331	19	8.6	19	73	17	114	42	24	20	12	1.87
2517343--2517400	14	3.9	14	79	16	71	8	17	25	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2517338--2517416	32	2.4	33	95	2	142	10	18	24	46	1.80
2517338--2517416	14	4.8	17	71	22	62	10	18	24	46	1.80
2517401--2517455	20	2.8	19	83	8	65	16	23	23	36	1.94
2517932--2517976	18	2.5	18	77	0	54	15	17	42	24	1.88
2519290--2519327	20	1.9	20	88	0	58	50	21	15	13	1.78
2519590--2519633	22	2.0	22	95	0	79	18	15	45	20	1.85
2519819--2519913	20	4.7	20	80	2	91	23	17	24	34	1.96
2519841--2519975	41	3.3	41	81	4	130	20	21	20	37	1.94
2519902--2519994	20	4.6	20	78	4	96	18	24	18	38	1.92
2519902--2519997	41	2.3	41	98	0	183	18	23	17	39	1.92
2523564--2523605	2	21.0	2	100	0	84	50	0	0	50	1.00
2526379--2526523	73	2.0	73	93	0	245	33	16	12	37	1.86
2527496--2527574	20	3.8	21	67	11	54	30	15	5	49	1.66
2527547--2527592	19	2.3	20	85	3	58	30	13	6	50	1.66
2528836--2528900	24	2.8	24	88	2	87	24	36	16	21	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!