genome.fa.s9572.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009572.1 Hibiscus syriacus cultivar Beakdansim tig00116937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2529503

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1477 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931295--931353	20	3.0	20	87	0	73	16	18	22	42	1.89
931490--931544	25	2.2	24	78	15	58	20	9	18	52	1.71
932675--932719	18	2.5	18	88	0	72	26	44	15	13	1.83
933105--933144	19	2.1	19	90	9	64	2	2	20	75	1.04
933198--933264	20	3.4	20	81	2	73	38	23	22	14	1.92
933253--933310	14	3.9	14	79	16	71	48	24	17	10	1.78
933237--933327	32	2.8	33	94	3	166	47	21	18	12	1.81
933339--933417	32	2.4	33	91	2	124	12	17	21	48	1.80
933412--933457	20	2.3	20	88	0	65	15	26	26	32	1.95
935326--935361	14	2.6	14	90	0	54	30	0	22	47	1.52
935488--935541	14	3.5	14	73	22	54	50	20	18	11	1.77
935565--935656	20	4.6	20	71	10	71	15	20	22	41	1.90
935565--935651	40	2.2	41	79	6	97	16	20	21	41	1.90
936789--936842	24	2.2	24	90	0	81	22	16	20	40	1.91
937017--937041	12	2.1	12	100	0	50	72	0	28	0	0.86
938987--939345	181	2.0	178	96	2	666	33	21	13	30	1.93
939486--939609	33	3.8	33	84	8	171	43	19	22	14	1.87
939485--939615	66	2.0	66	93	0	226	42	19	22	15	1.88
939609--939698	33	2.7	33	91	0	135	14	21	20	44	1.86
939805--939841	14	2.6	14	91	0	65	45	24	0	29	1.53
941201--941374	42	4.1	42	76	7	165	21	18	36	22	1.95
941201--941267	21	3.2	21	68	4	55	19	20	35	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941231--941407	85	2.1	84	95	2	327	23	16	37	22	1.93
941256--941404	42	3.5	42	81	1	190	24	15	38	22	1.92
941626--941810	91	2.0	90	91	6	300	47	18	12	21	1.82
943495--943607	33	3.1	37	76	15	117	45	19	22	13	1.85
943495--943607	19	6.1	19	77	13	110	45	19	22	13	1.85
943603--943650	20	2.5	19	77	12	53	10	16	27	45	1.80
944209--944262	20	2.7	20	91	0	81	25	18	24	31	1.97
944333--944373	21	2.0	21	85	0	55	34	31	17	17	1.93
946197--946236	19	2.1	19	95	0	71	20	12	20	47	1.81
947993--948048	22	2.5	22	75	8	60	51	0	3	44	1.18
948540--948573	8	4.0	8	92	7	50	2	14	0	82	0.79
948540--948573	17	2.0	17	88	11	52	2	14	0	82	0.79
951072--951183	56	2.0	56	96	3	208	28	11	1	58	1.44
951214--951246	16	2.1	16	94	0	57	36	6	21	36	1.78
951487--951573	24	3.5	25	75	20	76	48	2	0	49	1.13
951545--951589	22	2.0	23	86	4	65	44	2	0	53	1.13
951615--951677	22	2.9	22	72	9	58	47	0	1	50	1.10
951539--951655	29	3.9	29	75	13	78	47	1	0	50	1.17
951905--951959	20	2.7	20	78	13	67	56	0	0	43	0.99
952160--952234	39	1.9	39	97	0	141	37	26	8	28	1.84
954200--954270	31	2.3	30	85	7	90	59	0	2	38	1.12
954231--954326	26	3.6	27	77	18	87	51	0	2	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954278--954338	23	2.5	24	80	14	72	47	0	4	47	1.23
955071--955557	220	2.2	222	87	6	700	24	11	27	36	1.90
955547--955627	38	2.2	38	93	2	137	12	11	39	37	1.78
955744--955827	38	2.2	38	89	6	134	10	10	39	39	1.75
956351--956396	18	2.7	18	90	6	69	28	28	6	36	1.82
957080--957111	16	2.0	16	100	0	64	31	25	18	25	1.98
960943--961155	106	2.0	106	96	2	392	33	12	20	32	1.90
961412--961456	23	2.0	23	82	8	56	46	2	4	46	1.35
961888--961978	43	2.1	43	95	2	166	35	4	16	43	1.68
962284--962394	24	4.5	25	80	11	122	34	17	13	35	1.89
962374--962412	20	2.0	20	94	0	69	46	7	10	35	1.67
964350--964417	25	2.7	25	95	2	118	50	7	5	36	1.55
971339--971403	30	2.2	29	86	2	94	30	18	29	21	1.97
973208--973433	113	2.0	112	99	0	443	41	16	7	34	1.78
979558--979736	43	4.2	43	75	18	126	48	5	20	25	1.71
979638--979750	43	2.6	43	83	5	129	49	7	16	25	1.73
979638--979778	43	3.2	45	81	5	126	51	6	15	26	1.68
982323--982375	23	2.3	23	93	6	90	22	18	11	47	1.81
982692--982785	32	2.9	32	76	14	102	47	1	1	50	1.15
986160--986263	43	2.4	43	86	0	154	46	1	1	50	1.23
989316--989348	12	2.6	13	85	9	50	42	6	9	42	1.61
990496--990525	15	2.0	15	100	0	60	33	26	6	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991365--991441	23	3.5	22	84	6	79	33	18	22	25	1.96
991381--991429	23	2.1	23	96	0	89	36	16	24	22	1.94
992978--993121	72	2.0	72	100	0	288	26	18	13	41	1.87
997900--997955	28	2.0	27	83	10	69	37	8	0	53	1.32
999066--999103	17	2.2	17	86	13	51	73	0	0	26	0.83
999745--999792	24	2.0	24	88	4	71	68	2	8	20	1.26
1001993--1002029	19	1.9	19	88	0	56	37	8	0	54	1.30
1004142--1004306	59	2.8	60	81	5	199	38	6	23	32	1.80
1005858--1005904	18	2.6	18	100	0	94	31	27	27	12	1.93
1005995--1006038	21	2.0	22	91	4	72	40	15	18	25	1.90
1007253--1007295	20	2.2	20	91	0	68	51	4	18	25	1.66
1012060--1012111	19	2.7	19	96	0	95	21	23	25	30	1.99
1012701--1012743	22	2.0	22	95	0	77	25	18	20	34	1.96
1014037--1014119	42	2.0	42	83	4	105	38	10	7	43	1.67
1020551--1020728	90	2.0	90	92	2	295	45	6	10	38	1.63
1030241--1030287	24	2.0	24	86	0	67	31	2	17	48	1.58
1030474--1031644	200	5.8	200	92	0	1837	42	15	14	27	1.86
1030474--1031860	200	6.9	199	89	2	1768	40	15	14	28	1.87
1031523--1032088	200	2.8	200	83	4	671	36	15	14	33	1.88
1030723--1032085	200	6.8	200	86	3	655	40	15	14	29	1.87
1036112--1036274	87	1.9	87	94	0	290	30	14	12	41	1.84
1036196--1036240	23	2.0	23	95	0	81	37	15	8	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041933--1042031	45	2.2	45	87	0	135	23	38	14	24	1.91
1042946--1042988	22	2.0	22	86	13	63	30	6	2	60	1.35
1048024--1048050	7	3.9	7	100	0	54	88	0	11	0	0.50
1052586--1052706	22	5.5	22	90	0	188	36	12	11	39	1.79
1053399--1053608	74	2.9	73	91	1	339	30	20	11	36	1.89
1053399--1053581	37	5.0	36	66	5	134	32	19	10	36	1.87
1053973--1054071	45	2.2	45	88	0	144	24	37	14	24	1.92
1054979--1055021	22	2.0	21	82	13	52	27	6	4	60	1.43
1055089--1055131	2	21.5	2	100	0	86	51	0	0	48	1.00
1058755--1058783	14	2.1	14	100	0	58	27	0	13	58	1.36
1060516--1060675	81	2.0	82	94	1	286	36	8	12	41	1.74
1061148--1061274	60	2.0	60	85	5	164	39	12	10	37	1.77
1061165--1061298	60	2.2	60	80	8	166	38	13	8	38	1.76
1065577--1065641	3	22.0	3	96	3	123	33	0	0	66	0.92
1067067--1067093	3	9.0	3	100	0	54	66	0	33	0	0.92
1071422--1071464	21	2.0	21	82	8	52	32	27	23	16	1.96
1071493--1071537	22	2.0	22	91	4	72	28	33	26	11	1.91
1072832--1073040	99	2.1	102	93	3	361	26	13	23	36	1.92
1081679--1081749	3	24.3	3	86	11	103	33	0	1	64	1.02
1081679--1081749	32	2.2	32	92	5	117	33	0	1	64	1.02
1081676--1081752	29	2.7	28	86	11	104	33	0	1	64	1.01
1083507--1083655	75	2.0	75	100	0	298	34	26	12	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1084361--1084605	125	2.0	120	94	5	429	34	5	20	38	1.77
1089687--1089742	23	2.6	21	78	15	60	33	3	0	62	1.12
1093352--1093690	169	2.0	170	98	0	662	33	17	19	30	1.95
1101100--1101134	18	1.9	18	94	0	61	28	31	22	17	1.96
1101463--1101505	19	2.4	17	81	11	50	48	20	0	30	1.50
1105488--1105538	18	2.8	17	82	11	57	49	23	0	27	1.51
1107493--1107533	20	2.0	21	95	4	75	24	19	21	34	1.97
1108291--1108339	19	2.5	19	83	9	55	51	2	14	32	1.54
1110516--1110546	2	15.5	2	100	0	62	51	0	0	48	1.00
1111707--1111753	21	2.2	21	84	0	58	29	14	6	48	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13