genome.fa.s9572.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009572.1 Hibiscus syriacus cultivar Beakdansim tig00116937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2529503

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1477 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242482--242521	20	2.0	20	90	0	62	7	12	25	55	1.63
242556--242614	31	1.9	31	96	0	109	40	16	11	30	1.85
245269--247396	156	13.8	156	84	6	2716	38	18	13	29	1.89
245269--247396	618	3.5	618	88	3	3119	38	18	13	29	1.89
247423--247484	20	3.1	20	88	9	83	32	1	0	66	1.02
247427--247484	21	2.8	21	89	7	84	32	1	0	65	1.03
252256--253069	105	7.8	105	97	0	1488	33	26	18	21	1.96
252256--253418	314	3.6	316	90	5	1841	34	26	18	21	1.96
252226--253418	419	2.8	423	91	4	1855	34	26	18	21	1.96
253046--253089	21	2.2	20	91	4	70	40	31	13	13	1.84
252942--253194	125	2.0	125	96	1	463	35	27	17	19	1.94
253067--253418	106	3.3	106	91	3	534	36	25	17	21	1.94
253722--253862	36	3.9	36	94	0	228	21	21	15	41	1.90
254290--254351	20	3.1	20	88	9	83	32	1	0	66	1.02
254294--254351	21	2.8	21	89	7	84	32	1	0	65	1.03
256046--257460	157	9.1	157	86	3	1953	37	17	13	30	1.89
256054--257441	468	3.0	469	87	2	1981	38	17	13	30	1.89
256046--257460	625	2.3	621	91	1	2276	37	17	13	30	1.89
261386--261974	295	2.0	294	83	3	747	40	17	16	25	1.89
265380--265417	15	2.4	16	83	16	53	26	7	5	60	1.46
270758--270822	32	2.0	33	90	3	105	33	13	7	44	1.73
276769--276816	19	2.5	19	93	0	78	25	2	14	58	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277774--277847	30	2.4	32	88	4	107	39	12	8	40	1.72
278167--278218	2	26.0	2	100	0	104	50	0	0	50	1.00
280293--280326	15	2.3	15	90	5	52	58	0	0	41	0.98
280699--280764	34	1.9	34	82	11	82	50	7	0	42	1.31
280798--280850	18	2.9	18	88	5	72	47	0	7	45	1.31
280804--280851	2	24.0	2	83	8	62	47	0	6	45	1.27
288735--288785	13	4.2	12	78	19	52	56	0	3	39	1.18
290313--290392	3	26.0	3	82	2	88	57	0	0	42	0.98
290462--290508	23	2.0	24	95	4	87	51	8	12	27	1.69
290541--290938	46	8.7	46	94	0	615	35	18	22	23	1.96
291969--292024	17	3.2	16	78	14	58	62	0	1	35	1.06
291993--292043	19	2.6	19	87	3	66	54	0	3	41	1.19
293611--294462	106	8.0	106	93	0	1402	22	18	25	34	1.96
296092--296149	13	4.1	14	75	22	50	0	13	6	79	0.93
296063--296144	7	11.6	7	75	11	60	1	12	6	80	0.95
296065--296149	20	4.1	20	74	15	64	1	12	7	78	1.00
296063--296147	24	3.6	23	76	12	66	1	11	7	80	0.97
296086--296149	15	4.3	15	79	16	71	0	14	6	79	0.91
296086--296144	31	1.9	31	89	6	93	0	13	5	81	0.85
300879--300948	9	8.4	8	75	17	54	64	0	1	34	1.03
300900--300977	25	3.4	21	74	20	68	62	1	1	34	1.11
301612--301713	37	2.8	37	84	3	125	31	12	14	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302347--302489	52	2.7	54	79	6	184	24	25	11	38	1.89
306640--306676	14	2.4	16	86	8	51	0	16	0	83	0.64
309540--309623	41	2.0	43	83	4	109	33	26	13	27	1.93
310848--310884	13	3.0	13	84	11	51	70	0	2	27	1.01
310848--310909	24	2.6	25	82	5	74	66	3	3	27	1.23
311711--311861	75	2.0	74	87	8	216	53	2	2	41	1.29
313229--313304	3	25.0	3	84	10	93	60	0	0	39	0.97
317550--317858	155	2.0	153	96	3	575	34	12	15	37	1.85
318619--318675	3	18.3	3	78	7	60	40	0	0	59	0.97
319965--320014	15	3.3	15	73	15	50	28	6	0	66	1.15
325354--325390	2	18.0	2	88	5	56	45	5	0	48	1.25
327889--328227	113	3.0	114	91	1	538	33	15	20	30	1.94
330199--330304	54	2.0	54	88	0	158	38	12	23	25	1.90
330707--330759	22	2.4	22	90	0	88	35	13	15	35	1.86
331555--331841	76	3.8	76	96	0	522	22	18	22	35	1.96
331967--332301	76	4.4	76	94	0	580	24	18	21	35	1.96
331967--332301	153	2.2	152	94	0	580	24	18	21	35	1.96
332436--332519	31	2.7	31	85	5	91	35	3	0	60	1.14
332464--332519	3	18.3	3	85	3	76	37	0	0	62	0.95
333796--333850	15	3.7	15	74	13	51	29	5	1	63	1.27
334967--335021	19	2.9	19	82	12	69	50	10	20	18	1.76
336906--336975	36	2.0	35	85	2	95	21	15	27	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345070--345095	13	2.0	13	100	0	52	38	23	15	23	1.92
350291--350324	17	2.0	17	88	11	52	32	11	11	44	1.77
350295--350333	18	2.2	18	86	9	53	38	10	7	43	1.67
353340--353384	21	2.1	21	91	0	72	17	22	17	42	1.89
353387--353477	20	4.6	20	84	5	112	29	20	20	28	1.98
353893--353925	14	2.5	13	86	13	50	48	24	21	6	1.72
353900--353926	14	1.9	14	100	0	54	44	29	18	7	1.77
356029--356298	140	1.9	140	95	0	486	30	12	15	42	1.84
356269--356507	20	12.9	20	70	18	158	33	22	17	25	1.96
356297--356542	34	6.9	34	72	15	183	34	23	18	23	1.96
356331--356556	74	3.1	73	83	4	285	33	23	19	24	1.97
356277--356487	54	3.9	54	72	17	186	34	23	17	24	1.96
356513--356556	20	2.2	20	84	4	54	29	25	20	25	1.99
358179--358279	21	4.8	21	72	3	78	22	17	36	22	1.95
358187--358279	42	2.2	42	80	3	107	22	16	39	21	1.92
358765--358810	20	2.4	19	89	7	67	39	28	17	15	1.90
358854--358921	20	3.4	20	91	0	109	17	19	26	36	1.94
358836--358921	40	2.3	37	82	11	97	16	19	24	39	1.91
360416--360525	20	5.9	19	79	13	86	43	23	19	13	1.86
360921--360963	22	2.0	22	100	0	86	18	13	41	25	1.88
361137--361254	20	5.9	20	81	0	137	25	23	24	26	2.00
361135--361254	60	2.0	60	85	0	159	26	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361865--361938	31	2.4	31	100	0	148	28	10	13	47	1.76
361949--362022	10	7.6	10	68	22	50	58	21	9	10	1.60
361953--362017	16	4.1	16	89	0	103	56	23	10	9	1.61
362241--362305	11	5.8	11	85	3	85	26	26	20	27	1.99
362252--362307	23	2.5	22	88	2	85	28	23	19	28	1.98
362232--362301	34	2.0	35	86	5	97	27	27	17	28	1.97
363533--363623	7	13.0	7	86	4	130	16	0	38	45	1.48
363788--363831	10	4.4	10	94	0	70	54	22	11	11	1.68
363788--363855	20	3.2	20	78	15	73	51	23	11	13	1.73
365215--365262	23	2.1	23	100	0	96	39	4	12	43	1.62
367837--367861	10	2.5	10	100	0	50	60	24	8	8	1.52
371908--372003	48	2.0	48	95	0	174	31	10	25	33	1.89
375544--375631	33	2.7	34	92	3	119	25	44	9	21	1.81
375554--375631	33	2.4	33	97	2	149	24	46	7	21	1.77
390391--390424	2	17.0	2	100	0	68	50	0	0	50	1.00
393605--393658	27	2.0	27	100	0	108	22	11	18	48	1.79
398585--398623	16	2.4	16	87	8	53	51	10	25	12	1.71
398887--398923	20	2.0	20	89	10	60	48	2	5	43	1.40
402652--402696	11	4.1	11	82	5	56	71	4	11	13	1.29
402652--402693	22	1.9	22	90	9	68	69	4	11	14	1.34
403173--403218	22	2.0	22	83	12	56	52	13	2	32	1.52
407864--407909	22	2.0	22	83	12	56	52	13	2	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410649--410681	9	3.7	9	88	11	50	45	0	0	54	0.99
414785--414946	53	2.9	54	74	16	159	46	4	6	41	1.52
423496--423538	19	2.3	19	84	8	52	76	9	6	6	1.15
426243--426314	36	2.0	36	91	0	117	22	19	26	31	1.97
428094--428133	19	2.1	19	95	0	71	22	32	15	30	1.94
428400--428454	19	2.9	19	82	12	69	50	10	20	18	1.76
440500--440551	19	2.7	19	100	0	104	21	17	30	30	1.96
440579--440617	20	2.0	20	89	0	60	20	15	33	30	1.94
445886--445961	30	2.5	30	73	0	80	18	5	15	60	1.53
449611--449688	27	2.9	27	77	11	79	34	43	14	7	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13