genome.fa.s9572.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009572.1 Hibiscus syriacus cultivar Beakdansim tig00116937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2529503

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1477 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450462--450602	60	2.3	60	80	9	153	36	17	2	43	1.60
450695--450756	2	30.5	2	96	3	115	50	0	1	48	1.10
451831--451875	22	2.0	23	83	12	58	33	2	6	57	1.37
453073--453170	49	2.0	48	98	2	187	22	17	18	41	1.90
453688--453751	30	2.1	30	88	0	92	35	29	20	14	1.92
458212--458267	19	2.9	19	71	10	51	16	19	12	51	1.75
458250--458297	20	2.3	21	92	3	80	16	16	12	54	1.72
458431--458504	32	2.3	32	76	2	78	17	22	25	33	1.96
461570--461603	12	2.8	12	86	0	50	11	20	14	52	1.73
461586--461679	38	2.5	38	96	0	170	15	22	11	50	1.77
461586--461679	19	4.9	19	80	0	116	15	22	11	50	1.77
461703--461777	31	2.4	30	80	6	87	14	24	26	34	1.94
463577--463629	19	2.8	19	76	0	61	22	11	13	52	1.71
463767--463842	32	2.4	31	80	4	89	13	22	27	36	1.91
473884--473949	23	2.9	23	74	0	69	31	22	25	19	1.98
474421--474451	2	15.5	2	100	0	62	48	0	0	51	1.00
475514--475591	20	3.8	20	75	18	70	24	25	19	30	1.98
477177--477264	40	2.1	42	87	6	135	23	18	9	48	1.76
481364--481440	3	25.7	3	100	0	154	32	0	0	67	0.91
481861--481928	30	2.3	30	100	0	136	42	10	8	38	1.70
482529--482578	26	1.9	26	83	0	64	22	22	22	34	1.97
487132--487203	37	1.9	37	100	0	144	33	25	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488567--488630	29	2.2	29	97	0	119	9	14	18	57	1.63
488835--488863	8	3.6	8	100	0	58	62	0	0	37	0.96
489146--489721	305	1.9	305	91	0	938	35	20	19	24	1.96
496125--496193	23	3.0	23	82	0	84	28	26	24	20	1.99
496209--496421	103	2.1	103	95	0	381	36	23	13	26	1.92
497795--497848	20	2.6	21	88	8	83	18	29	20	31	1.96
498733--498775	17	2.6	16	78	7	50	39	25	0	34	1.56
501501--501569	23	3.0	23	82	0	84	28	26	24	20	1.99
501585--501797	103	2.1	103	95	0	381	36	23	13	26	1.92
503147--503206	20	2.9	21	82	7	77	18	26	21	33	1.96
508147--508279	63	2.1	63	95	0	239	29	24	19	27	1.98
512489--512532	22	2.0	22	86	8	63	31	20	18	29	1.96
517764--517799	5	7.2	5	87	0	54	2	19	2	75	1.06
517844--517893	22	2.3	22	79	3	57	34	0	4	62	1.14
518868--518918	25	2.0	24	81	7	57	37	17	0	45	1.49
519203--519282	35	2.3	35	86	0	115	42	23	0	33	1.55
520121--520195	23	3.3	23	85	3	100	29	25	17	28	1.97
521689--521957	148	1.8	148	95	0	493	35	8	10	45	1.69
531372--532729	729	1.8	724	85	3	1565	30	17	22	29	1.96
538847--538885	20	2.0	20	84	0	51	23	7	23	46	1.78
539062--539112	23	2.3	23	83	6	70	19	23	39	17	1.92
549140--549180	21	2.0	21	85	0	55	14	29	2	53	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552705--552751	25	1.9	25	87	12	71	38	4	4	53	1.40
552925--552963	20	2.0	20	84	0	51	23	7	23	46	1.78
553142--553202	20	2.9	21	87	7	79	18	26	34	21	1.96
560662--560722	18	3.5	17	80	6	68	37	11	13	37	1.80
568875--568907	7	4.7	7	96	0	57	30	24	30	15	1.95
571143--571262	35	3.5	35	83	6	156	25	16	30	28	1.97
571204--571260	15	3.5	15	72	21	51	19	19	33	28	1.96
584594--584678	42	2.0	42	90	0	134	18	17	16	47	1.84
584592--584686	42	2.3	42	87	1	129	17	15	16	49	1.80
585035--585105	19	3.7	18	72	10	52	49	1	1	47	1.18
585445--585486	14	2.9	14	82	13	50	38	19	9	33	1.84
585488--585562	30	2.5	30	91	2	116	33	17	5	44	1.71
585489--585561	15	4.9	15	77	8	69	34	17	2	45	1.63
591620--591689	34	2.1	34	89	5	108	21	31	15	31	1.95
592035--592096	23	2.8	22	87	4	90	12	29	38	19	1.89
600492--600540	20	2.4	20	82	3	62	16	36	28	18	1.92
602512--602720	65	3.2	63	81	12	246	26	17	24	31	1.97
602684--602733	20	2.5	20	100	0	100	18	16	36	30	1.92
603203--603262	2	30.0	2	96	0	111	48	1	0	50	1.11
605253--605334	23	3.6	22	75	8	85	24	23	28	24	2.00
621407--621444	20	1.9	20	88	0	58	78	5	5	10	1.06
625094--625198	49	2.3	46	84	12	128	33	0	12	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636828--636852	12	2.1	12	100	0	50	68	0	0	32	0.90
637667--637763	36	2.7	36	90	1	151	42	29	0	27	1.56
638247--638539	148	2.0	148	93	1	507	47	10	7	34	1.66
638689--638789	35	2.9	35	81	7	116	31	0	25	41	1.62
643858--644104	127	1.9	129	80	5	286	33	17	16	33	1.92
643741--644286	281	2.0	276	83	4	686	31	17	17	33	1.94
646246--646328	9	9.1	9	72	22	59	27	4	1	66	1.19
646274--646306	16	2.0	17	88	5	50	30	6	0	63	1.18
648374--648447	37	2.0	36	84	7	96	50	4	0	45	1.20
667356--667394	18	2.2	18	85	0	51	20	48	20	10	1.78
676483--676558	21	3.6	21	100	0	152	27	19	23	28	1.98
679351--679400	25	2.0	25	100	0	100	40	20	8	32	1.81
684214--684328	60	1.9	60	83	0	149	25	20	26	27	1.99
687718--687759	21	2.0	21	95	0	75	26	28	21	23	1.99
687872--687928	15	3.5	15	72	25	53	19	24	36	19	1.94
687871--687955	34	2.5	34	96	1	152	17	27	35	20	1.95
687921--687981	21	3.0	21	88	7	90	14	29	36	19	1.92
689380--689427	19	2.5	20	82	3	62	29	12	6	52	1.63
691099--691175	13	5.3	13	78	18	73	15	45	22	16	1.85
691077--691169	18	5.3	18	81	16	115	16	48	21	13	1.80
691081--691161	31	2.6	31	96	0	153	16	48	22	13	1.80
691135--691175	8	5.5	8	83	16	61	14	41	24	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691169--691195	10	2.7	10	100	0	54	18	22	37	22	1.95
693659--693758	24	4.2	24	75	5	94	23	13	17	47	1.82
694841--694882	21	2.0	21	95	0	75	26	28	21	23	1.99
694995--695076	34	2.4	34	91	2	128	20	21	34	23	1.97
695046--695104	20	3.0	20	85	5	84	15	28	33	22	1.94
703486--703711	36	6.3	35	75	9	145	38	19	17	24	1.93
703479--703712	72	3.3	72	76	6	224	37	20	17	24	1.94
704047--704077	2	15.5	2	100	0	62	48	0	0	51	1.00
704081--704136	26	2.2	26	84	12	71	28	0	0	71	0.86
704091--704136	16	2.9	15	84	9	56	32	0	0	67	0.91
704085--704136	25	2.0	26	85	3	70	28	0	0	71	0.87
705234--705269	5	7.4	5	90	6	56	80	0	2	16	0.83
707422--707462	21	2.0	21	95	0	73	36	9	0	53	1.34
711454--711483	4	7.2	4	92	7	51	46	0	0	53	1.00
711514--711555	10	3.7	11	76	17	50	50	0	0	50	1.00
711813--731638	172	115.9	172	96	1	36588	37	16	9	36	1.82
731487--731786	148	2.0	148	98	1	584	37	16	10	35	1.84
731635--753456	171	128.0	171	97	1	40762	37	16	9	35	1.82
753716--753779	27	2.4	27	100	0	128	26	12	12	48	1.76
755391--755557	58	2.8	59	81	8	189	32	23	5	37	1.79
755678--755791	60	1.9	60	82	7	142	38	2	23	35	1.69
757129--757172	3	15.0	3	86	13	65	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757129--757172	16	2.7	17	93	6	74	34	0	0	65	0.93
757130--757170	13	3.1	14	93	6	68	34	0	0	65	0.93
760072--760129	27	2.3	25	82	11	75	13	18	10	56	1.65
762811--762841	2	15.5	2	100	0	62	51	0	0	48	1.00
764108--764179	32	2.2	32	82	4	83	33	22	13	30	1.93
764249--764435	65	2.9	66	82	10	212	30	15	12	41	1.85
764439--764664	98	2.2	101	84	6	289	30	19	12	37	1.89
764695--765303	134	4.5	136	83	4	741	26	30	17	25	1.97
764695--765303	271	2.3	270	88	1	871	26	30	17	25	1.97
765413--765443	13	2.5	13	94	5	55	6	29	12	51	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13