Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009581.1 Hibiscus syriacus cultivar Beakdansim tig00116958_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2551150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1494 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2431820--2431874
23
2.4
23
81
6
67
52
1
5
40
1.35
2431884--2431948
21
3.0
21
77
6
69
52
1
1
44
1.19
2434811--2434840
3
10.0
3
100
0
60
33
0
0
66
0.92
2436043--2436101
26
2.5
24
76
20
61
49
0
1
49
1.11
2436544--2436583
19
2.1
19
85
0
53
17
10
12
60
1.59
2438306--2438348
16
2.7
16
81
0
50
48
18
2
30
1.60
2441055--2441258
44
5.2
42
62
25
113
25
0
12
61
1.37
2441052--2441262
76
2.8
76
94
2
352
26
0
11
61
1.37
2442492--2442597
5
20.8
5
72
7
61
23
5
1
68
1.20
2442497--2442535
21
1.9
20
89
5
60
15
5
2
76
1.06
2446420--2446533
42
2.7
41
82
6
140
33
21
19
25
1.97
2446975--2447088
42
2.7
41
86
6
149
30
22
20
26
1.98
2446966--2447040
20
3.7
20
71
3
69
29
22
21
26
1.99
2446400--2447238
278
3.0
276
86
3
1141
34
20
15
29
1.94
2446988--2447061
20
3.5
21
68
15
55
32
21
20
25
1.97
2447125--2447268
52
2.6
54
81
9
159
40
20
11
28
1.86
2451279--2451326
19
2.4
20
89
10
80
20
25
14
39
1.91
2453332--2453371
21
2.0
20
86
13
57
60
7
15
17
1.57
2455094--2455124
15
2.1
15
93
0
53
45
3
0
51
1.17
2456726--2456793
29
2.3
29
100
0
136
51
11
16
20
1.75
2458447--2458573
44
3.2
44
63
28
118
25
1
12
59
1.42
2458444--2458651
76
2.8
76
93
2
350
26
1
12
59
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2459331--2459359
15
2.0
15
93
6
51
27
0
0
72
0.85
2461934--2461978
21
2.2
21
84
4
56
57
4
13
24
1.54
2462221--2462359
74
1.9
74
81
3
172
37
13
15
33
1.86
2479197--2479358
58
2.8
60
82
5
188
30
22
4
41
1.75
2479211--2479358
60
2.5
58
81
8
174
31
23
4
41
1.73
2482676--2482748
34
2.1
34
97
0
137
28
15
36
19
1.92
2491321--2491371
21
2.3
23
90
6
79
25
0
3
70
1.04
2491321--2491372
22
2.3
23
83
9
72
25
0
3
71
1.03
2493742--2494041
81
3.7
81
86
1
363
32
22
21
23
1.98
2495979--2496039
23
2.7
23
87
5
79
40
16
16
26
1.89
2496121--2496163
16
2.7
16
100
0
86
32
18
11
37
1.87
2498799--2498845
23
2.0
23
87
0
67
25
14
21
38
1.92
2500957--2501019
21
3.0
22
75
15
78
42
14
1
41
1.55
2507038--2507063
2
13.0
2
100
0
52
50
0
0
50
1.00
2510339--2510368
2
15.0
2
100
0
60
50
0
0
50
1.00
2510134--2510562
222
1.9
222
96
0
786
28
17
19
34
1.95
2524649--2524730
31
2.6
32
79
9
89
17
26
30
25
1.97
2527532--2527582
3
17.0
3
87
0
66
33
41
0
25
1.56
2530121--2530161
18
2.3
18
91
0
64
4
31
17
46
1.69
2538538--2538609
30
2.4
30
95
0
126
30
23
20
25
1.99
2538593--2538783
31
6.1
30
76
16
183
29
18
20
31
1.96
2538649--2538766
32
3.8
32
79
13
147
30
16
18
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2538629--2538783
63
2.5
63
96
0
283
29
18
18
33
1.95
2539433--2539589
64
2.5
64
77
12
153
27
19
20
33
1.96
2543602--2543673
30
2.4
30
92
0
117
30
25
20
23
1.99
2543661--2543846
31
5.9
31
80
12
193
30
19
19
30
1.97
2543693--2543846
63
2.5
63
97
1
292
29
18
18
32
1.95
2543662--2543846
94
2.0
94
83
8
234
29
19
20
30
1.97
2544487--2544643
64
2.5
64
77
12
153
27
19
20
33
1.96
2546747--2546805
29
2.1
28
87
9
84
54
1
0
44
1.10
2549547--2549578
2
16.0
2
100
0
64
50
0
0
50
1.00
2550161--2550199
2
19.5
2
100
0
78
51
0
0
48
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!