genome.fa.s9581.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009581.1 Hibiscus syriacus cultivar Beakdansim tig00116958_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2551150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1494 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228387--229234	132	6.5	132	81	4	940	29	28	19	22	1.98
228383--229267	384	2.3	390	82	4	1038	28	29	20	22	1.98
232961--232986	3	8.7	3	100	0	52	34	34	0	30	1.58
236162--236440	153	1.8	153	87	0	414	38	17	21	22	1.93
242158--242266	48	2.3	48	87	4	150	32	4	13	49	1.63
243779--243829	26	2.0	26	84	0	66	31	21	15	31	1.95
247251--247882	342	1.8	342	84	2	874	35	10	18	36	1.85
255913--255966	21	2.6	21	84	0	63	24	5	3	66	1.29
255919--255965	10	4.6	10	84	5	58	23	4	4	68	1.26
259120--259164	2	22.5	2	100	0	90	48	0	0	51	1.00
259965--260005	18	2.2	19	91	4	66	21	0	24	53	1.46
272378--272432	24	2.2	24	83	3	65	41	12	12	32	1.81
276356--276431	31	2.6	29	76	11	84	46	0	0	53	1.00
277155--277265	58	1.9	58	87	3	161	30	14	18	36	1.90
281301--281327	14	1.9	14	100	0	54	40	22	22	14	1.90
282221--282353	61	2.2	61	81	6	164	35	15	15	33	1.89
288031--288388	181	2.0	181	99	0	707	42	13	9	33	1.78
288430--288482	25	2.2	24	89	3	79	22	15	7	54	1.65
301118--301169	24	2.0	26	89	10	81	21	19	28	30	1.97
301166--301272	50	2.2	48	83	9	128	17	18	25	38	1.93
301285--301388	18	5.5	18	70	18	77	14	20	22	43	1.87
301263--301395	37	3.5	37	82	9	160	18	18	22	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301711--301758	19	2.5	19	96	0	87	43	18	18	18	1.88
301749--301821	22	3.4	22	71	21	82	38	24	20	16	1.93
301771--301844	20	3.6	20	74	13	78	40	22	22	13	1.89
301745--301869	42	3.0	42	91	3	191	39	23	20	16	1.92
303950--303978	2	15.0	2	92	7	51	48	0	0	51	1.00
312630--312690	3	20.3	3	96	0	113	32	1	0	65	1.02
328871--328931	28	2.2	27	80	8	68	21	6	3	68	1.27
331694--331838	72	2.0	72	100	0	290	34	23	12	29	1.91
333756--333793	19	2.0	19	100	0	76	5	5	47	42	1.48
337184--337349	83	2.0	83	100	0	332	10	36	27	25	1.89
337646--337688	20	2.1	21	91	4	70	32	13	6	46	1.71
345364--345399	18	1.9	18	88	5	54	52	19	0	27	1.46
346875--346937	3	22.0	3	81	12	71	28	1	0	69	0.97
346941--347192	134	1.9	134	98	0	486	32	27	16	23	1.96
348424--348453	14	2.1	15	93	6	53	20	0	16	63	1.31
348655--348730	29	2.8	26	72	13	64	15	15	13	55	1.70
351745--351783	20	2.0	20	89	0	60	30	15	15	38	1.88
352336--352433	23	4.0	24	79	12	85	76	7	15	1	1.05
352364--352435	11	6.6	10	77	17	56	81	4	12	1	0.89
352337--352432	25	4.0	23	80	12	86	78	7	13	1	1.01
352344--352435	14	6.4	14	72	20	66	79	6	13	1	0.98
352391--352432	11	3.9	10	85	14	57	83	2	11	2	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352395--352435	18	2.4	17	84	11	57	82	2	12	2	0.86
352371--352432	33	1.9	33	83	9	83	82	4	11	1	0.89
352368--352431	10	5.8	11	77	18	55	82	4	10	1	0.88
352338--352455	43	2.9	41	69	19	95	75	8	14	1	1.11
353995--354092	28	3.5	28	88	6	153	27	12	14	45	1.80
354063--354217	59	2.6	61	89	6	244	31	11	14	41	1.82
354186--354248	30	2.1	30	88	2	92	36	9	15	38	1.81
354185--354248	29	2.1	31	82	8	87	37	9	15	37	1.80
354123--354321	92	2.2	93	84	6	253	31	12	14	41	1.83
354182--354402	122	1.8	121	83	5	293	31	13	13	41	1.83
353914--354491	273	2.1	269	80	11	644	29	14	14	42	1.84
354523--354656	36	4.0	33	76	15	114	32	17	12	36	1.88
354562--354656	31	2.8	33	81	12	113	31	18	12	36	1.89
354851--355184	133	2.5	133	86	4	449	27	32	17	22	1.96
355138--355224	37	2.2	40	94	6	153	26	32	11	29	1.91
355419--355476	3	20.0	3	79	13	68	32	1	0	65	1.03
355413--355469	11	5.2	11	77	10	55	28	1	0	70	0.98
355420--355481	19	3.2	20	80	17	78	32	3	0	64	1.09
356265--356302	10	4.0	10	80	13	53	0	44	0	55	0.99
360440--360522	29	2.8	29	88	1	130	42	9	15	32	1.80
360970--361022	18	2.9	18	88	2	70	50	0	1	47	1.12
360985--361033	18	2.7	18	87	3	62	55	2	2	40	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360970--361034	19	3.3	20	79	18	66	55	1	1	41	1.18
368488--368558	18	3.9	18	94	0	115	19	19	33	26	1.96
369910--370089	65	2.8	64	86	2	227	30	16	23	29	1.96
372893--372931	15	2.6	15	100	0	78	17	33	12	35	1.88
374716--374842	64	2.0	65	87	1	184	32	16	20	30	1.95
374719--374856	64	2.2	63	81	5	152	32	17	19	30	1.95
375862--375906	7	6.3	7	84	2	54	46	2	2	48	1.26
379832--379871	19	2.2	18	86	13	55	70	2	2	25	1.13
379967--380055	31	2.9	31	86	5	119	39	10	12	38	1.77
380929--381028	52	1.9	52	83	0	128	27	12	20	41	1.87
382619--382656	19	2.0	19	94	0	67	57	2	7	31	1.41
383191--383326	37	3.8	36	83	9	170	41	12	14	30	1.83
383914--383942	2	14.5	2	100	0	58	48	0	0	51	1.00
384128--384166	2	19.5	2	100	0	78	48	0	0	51	1.00
384215--384249	9	3.9	9	88	11	54	20	2	0	77	0.90
384215--384250	13	2.6	14	86	8	56	19	2	0	77	0.88
386882--386914	14	2.4	14	94	0	57	42	18	6	33	1.75
387224--387290	9	7.7	9	73	9	59	80	4	14	0	0.86
387230--387284	19	2.9	18	84	13	67	80	5	14	0	0.89
387227--387290	28	2.4	27	86	5	85	81	4	14	0	0.85
387227--387317	18	5.3	17	73	17	64	79	5	14	1	0.97
387246--387299	14	3.9	14	76	9	56	81	5	12	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387244--387304	28	2.2	28	84	0	77	80	6	11	1	0.97
388786--388907	36	3.4	36	75	8	106	24	20	16	38	1.92
388923--389047	36	3.4	36	87	5	171	26	20	13	40	1.89
388836--389110	138	2.0	138	86	2	383	28	20	12	38	1.90
389005--389179	67	2.6	65	84	6	217	32	21	9	36	1.85
388996--389178	68	2.7	67	84	4	219	30	21	9	38	1.85
389783--390640	105	8.3	103	89	5	1234	33	26	18	21	1.96
389783--390640	205	4.2	205	92	2	1346	33	26	18	21	1.96
391187--391288	34	2.8	37	89	10	167	43	14	14	27	1.85
391187--391322	37	3.8	35	84	9	168	41	13	14	29	1.85
391911--391951	2	20.5	2	100	0	82	48	0	0	51	1.00
392203--392270	22	3.3	22	67	23	56	14	8	1	75	1.12
392203--392247	9	5.1	9	82	12	58	17	4	0	77	0.92
392203--392248	13	3.4	14	82	8	60	17	4	0	78	0.91
392224--392279	18	3.1	17	76	19	51	16	10	1	71	1.22
393959--394019	23	2.7	22	80	14	63	39	8	0	52	1.31
400418--400442	2	12.5	2	100	0	50	48	0	0	52	1.00
401573--401661	3	28.0	3	78	10	88	62	1	31	4	1.22
401569--401661	25	3.6	25	94	2	150	63	1	31	4	1.21
401660--401684	3	8.3	3	100	0	50	36	0	64	0	0.94
402077--402112	18	2.0	18	94	0	63	55	13	5	25	1.60
408758--409073	160	2.0	157	93	1	542	26	19	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423889--424040	74	2.1	74	100	0	304	38	10	7	43	1.68
428725--428755	5	6.2	5	100	0	62	61	0	0	38	0.96
431311--431646	168	2.0	168	100	0	672	30	9	19	39	1.84
432307--432360	27	2.0	28	88	3	83	46	14	9	29	1.76
433358--433411	27	2.0	28	88	3	83	46	14	9	29	1.76
435856--435915	29	2.0	32	83	9	81	33	25	0	41	1.55
436106--436170	30	2.1	31	83	8	80	70	3	10	15	1.27
436815--436853	20	2.0	20	85	5	53	20	12	7	58	1.58
437606--437657	21	2.5	21	87	3	70	38	17	23	21	1.93
437667--437739	21	3.5	21	79	3	76	23	21	17	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13