genome.fa.s9581.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009581.1 Hibiscus syriacus cultivar Beakdansim tig00116958_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2551150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1494 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1222882--1223038	41	3.9	41	70	11	126	38	25	17	19	1.93
1223025--1223198	20	8.6	20	79	5	118	34	25	20	20	1.96
1223005--1223199	40	4.9	39	80	3	183	35	24	20	19	1.95
1223005--1223198	60	3.2	60	83	0	244	35	24	20	19	1.95
1223579--1223648	33	2.2	33	92	2	115	11	24	17	47	1.80
1223728--1223832	19	5.7	19	73	13	76	42	20	24	11	1.85
1223785--1223841	14	3.7	14	75	20	60	43	22	24	8	1.81
1223740--1223857	33	3.4	33	89	5	164	44	22	22	10	1.83
1223875--1223964	14	5.7	14	72	23	72	8	24	23	43	1.82
1223858--1223972	33	3.5	33	96	0	212	9	22	20	46	1.79
1223853--1223950	19	5.7	19	69	22	81	10	22	22	44	1.82
1225671--1225953	93	3.1	93	98	0	541	22	12	18	46	1.83
1226001--1226110	19	6.3	19	68	20	78	45	29	17	8	1.77
1226017--1226110	19	5.5	19	71	23	100	46	29	17	6	1.72
1226018--1226110	33	2.8	32	95	4	168	46	30	17	6	1.73
1226106--1226239	19	7.6	19	73	18	119	11	19	23	45	1.82
1226111--1226202	33	2.8	33	95	1	168	10	20	21	46	1.81
1228155--1228190	14	2.6	14	95	0	63	33	0	22	44	1.53
1228297--1228403	19	5.6	19	100	0	214	45	16	21	15	1.85
1228393--1228701	19	17.7	19	80	17	359	14	22	18	45	1.84
1228393--1228673	51	5.3	52	85	8	408	14	22	17	45	1.84
1230983--1231007	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1231182--1231228	24	2.0	24	87	8	69	38	21	14	25	1.92
1231909--1232118	20	10.5	20	84	2	206	20	17	24	37	1.94
1232085--1232182	20	4.8	20	77	3	79	21	18	23	36	1.95
1232085--1232182	41	2.4	41	77	6	110	21	18	23	36	1.95
1234312--1234396	6	14.2	6	94	0	134	30	48	16	4	1.67
1234394--1234432	5	7.8	5	94	0	60	15	38	41	5	1.69
1240173--1240215	6	7.2	6	97	0	68	34	48	11	4	1.60
1243175--1243277	46	2.2	46	96	1	188	44	9	18	27	1.81
1244157--1244247	27	3.4	26	92	3	137	24	28	8	38	1.85
1247988--1248196	64	3.3	64	84	2	251	34	20	17	27	1.95
1254095--1254315	64	3.5	64	81	4	225	33	19	18	28	1.95
1254804--1254836	15	2.2	15	100	0	66	15	18	33	33	1.92
1258269--1258407	59	2.4	58	74	6	145	38	14	13	33	1.85
1258279--1258391	59	1.9	59	85	0	154	38	15	10	35	1.83
1258581--1258607	4	6.8	4	100	0	54	22	0	0	77	0.76
1261139--1261173	19	1.9	17	88	11	52	37	11	0	51	1.38
1267563--1267603	2	20.5	2	100	0	82	48	0	0	51	1.00
1271276--1271365	27	3.3	27	96	0	171	44	1	4	50	1.29
1271276--1271379	27	3.8	26	79	14	86	43	1	5	49	1.37
1271510--1271536	2	13.5	2	100	0	54	48	0	0	51	1.00
1273202--1273230	2	14.5	2	100	0	58	51	0	48	0	1.00
1282545--1282572	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1290875--1290919	22	2.0	24	82	8	58	68	2	6	22	1.24
1295694--1295944	110	2.3	109	78	8	265	25	13	14	45	1.82
1306544--1306591	18	2.7	17	81	9	51	25	8	33	33	1.86
1310193--1310319	59	2.1	60	84	4	159	40	2	22	34	1.67
1310436--1310484	12	4.3	11	82	12	55	53	2	0	44	1.12
1312367--1312488	61	2.0	61	100	0	244	32	18	22	26	1.97
1313036--1313109	37	2.0	37	100	0	148	21	16	21	40	1.91
1315132--1315498	185	2.0	185	97	0	698	53	10	4	31	1.54
1317730--1317773	18	2.5	17	85	7	52	50	0	0	50	1.00
1317868--1317912	22	2.1	21	83	4	54	51	2	6	40	1.41
1322229--1322262	6	5.7	6	89	0	50	70	0	11	17	1.16
1325339--1325383	19	2.3	19	81	11	56	62	13	2	22	1.42
1326187--1326222	2	18.5	2	94	5	65	50	0	0	50	1.00
1337461--1337539	30	2.6	29	77	16	81	13	29	29	27	1.95
1339194--1339239	22	2.1	22	100	0	92	43	4	32	19	1.71
1345590--1345642	27	1.9	28	88	3	81	20	5	22	50	1.69
1345590--1345650	27	2.2	28	85	2	79	21	6	24	47	1.74
1346417--1346468	19	2.7	19	93	0	86	26	28	21	23	1.99
1347232--1347284	21	2.5	21	84	6	72	20	24	18	35	1.95
1347274--1347387	20	5.7	20	83	2	156	39	20	19	21	1.93
1347274--1347410	20	6.8	21	78	7	122	37	20	18	23	1.94
1347274--1347405	40	3.3	39	82	3	165	37	20	19	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1347980--1348069	20	4.6	20	84	1	92	15	17	22	44	1.86
1349936--1350027	20	4.6	20	90	0	139	38	19	19	22	1.94
1350021--1350063	19	2.2	19	87	8	59	44	16	23	16	1.86
1350671--1350712	21	2.2	19	87	12	59	21	35	19	23	1.96
1352131--1352166	14	2.6	14	90	0	54	30	0	22	47	1.52
1352292--1352357	33	2.0	33	93	3	114	46	18	21	13	1.83
1352372--1352497	19	6.8	19	81	10	163	15	19	16	48	1.81
1352504--1352595	20	4.6	20	83	2	123	19	19	23	36	1.95
1352502--1352595	40	2.3	40	89	3	136	20	20	23	36	1.95
1355019--1355070	24	2.2	24	82	0	59	36	21	19	23	1.95
1355918--1356024	20	5.3	20	82	4	117	24	20	18	36	1.95
1356021--1356061	21	2.0	21	90	0	64	39	17	26	17	1.91
1357041--1357065	6	4.2	6	100	0	50	36	16	0	48	1.46
1358102--1358160	30	1.9	30	86	3	82	22	18	22	37	1.94
1363222--1363323	24	4.2	24	78	5	116	31	13	17	37	1.89
1363504--1363553	2	25.0	2	100	0	100	50	0	0	50	1.00
1385080--1385119	2	20.0	2	100	0	80	50	0	0	50	1.00
1392931--1392978	18	2.7	18	96	0	87	20	41	22	14	1.89
1394567--1394934	182	2.0	183	92	1	614	42	3	8	45	1.53
1396165--1396250	24	3.6	23	78	6	91	20	16	13	48	1.80
1396186--1396255	12	5.8	12	74	12	63	17	15	15	51	1.77
1396166--1396257	48	1.9	48	88	4	141	19	16	14	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1398342--1398382	6	7.0	6	97	2	75	31	51	17	0	1.46
1398870--1398937	6	11.5	6	98	1	129	0	16	51	32	1.45
1399031--1399119	41	2.2	41	93	0	151	38	22	17	21	1.94
1399049--1399127	22	3.7	22	70	13	67	37	24	17	20	1.93
1399045--1399181	41	3.3	42	82	9	131	40	22	17	18	1.91
1399112--1399212	20	5.0	20	75	7	87	45	22	16	14	1.84
1399071--1399201	61	2.2	59	78	10	138	41	23	17	17	1.90
1401650--1401677	2	14.0	2	100	0	56	50	0	0	50	1.00
1404087--1404144	23	2.5	23	100	0	116	37	8	12	41	1.73
1407320--1407382	26	2.5	24	73	9	63	31	12	1	53	1.48
1410743--1410847	24	4.4	24	78	4	86	17	17	16	49	1.80
1418237--1418283	21	2.2	21	96	0	85	34	27	14	23	1.94
1418237--1418289	21	2.5	21	90	0	70	33	30	13	22	1.92
1419890--1419953	23	2.8	23	92	0	101	21	23	25	29	1.99
1423278--1423333	21	2.7	21	97	0	103	28	25	25	21	1.99
1423368--1423427	22	2.7	22	100	0	120	25	38	23	13	1.91
1424961--1425024	23	2.8	23	90	0	101	20	23	25	31	1.98
1434199--1434269	32	2.2	32	85	2	90	36	1	11	50	1.47
1434199--1434296	31	3.1	32	79	5	94	33	1	12	53	1.45
1434844--1434905	11	5.5	11	77	7	70	25	20	17	35	1.95
1434844--1434905	23	2.7	23	89	0	106	25	20	17	35	1.95
1436242--1436323	7	11.7	7	73	10	60	20	1	35	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1436252--1436319	35	1.9	35	87	0	100	22	1	30	45	1.61
1436394--1436456	7	9.1	7	75	3	65	20	1	36	41	1.62
1436390--1436448	20	2.8	20	82	5	73	22	1	33	42	1.63
1436566--1436609	19	2.4	18	81	7	54	38	0	4	56	1.20
1437518--1437608	23	3.9	23	72	2	83	27	14	14	43	1.84
1437650--1437720	30	2.4	30	95	0	124	45	8	2	43	1.49
1437806--1437833	13	2.2	13	100	0	56	42	21	7	28	1.79
1438922--1438951	6	5.0	6	100	0	60	33	16	33	16	1.92
1441417--1441442	2	13.0	2	100	0	52	50	0	0	50	1.00
1443067--1443223	60	2.6	60	78	2	154	31	19	6	42	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13