genome.fa.s140.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold140
Parameters: 2 7 7 80 10 50 1000
Length:  3130556

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  14  of  20  ( 2326 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2183387--2183426	2	20.0	2	100	0	80	50	0	0	50	1.00
2192545--2192648	2	52.0	2	86	0	109	39	0	9	50	1.42
2193982--2194015	17	2.0	17	88	0	50	26	20	17	35	1.95
2200878--2200903	3	8.7	3	100	0	52	0	34	0	65	0.93
2200974--2201017	12	3.7	12	81	0	61	0	11	25	63	1.27
2200962--2201018	24	2.4	25	79	8	73	1	8	24	64	1.31
2201788--2201831	23	1.9	23	86	9	63	40	0	0	59	0.98
2202590--2202629	18	2.2	18	90	0	62	37	5	5	52	1.45
2202865--2202897	15	2.2	15	94	0	57	66	0	0	33	0.92
2203037--2203075	20	2.0	20	89	0	60	53	0	0	46	1.00
2203151--2203184	3	11.3	3	100	0	68	64	0	0	35	0.94
2205872--2205912	20	2.0	20	100	0	82	29	0	21	48	1.50
2206112--2206237	35	3.6	35	76	6	146	53	0	2	44	1.13
2206451--2206533	41	2.0	41	100	0	166	36	25	14	24	1.93
2206607--2206677	27	2.6	27	84	6	90	23	2	25	47	1.65
2206755--2206800	20	2.3	20	84	0	56	13	47	4	34	1.62
2210899--2210964	27	2.4	28	90	7	100	22	6	24	46	1.74
2211047--2211092	20	2.3	20	84	0	56	13	47	4	34	1.62
2212000--2212039	15	2.6	16	88	4	55	47	0	0	52	1.00
2212364--2212419	18	3.2	17	75	12	51	57	0	1	41	1.09
2212342--2212470	58	2.2	60	81	13	144	55	0	0	43	1.05
2212404--2212450	15	2.9	17	72	15	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2220361--2220387	2	13.5	2	100	0	54	48	0	0	51	1.00
2220633--2220681	2	24.5	2	84	15	66	46	4	0	48	1.20
2232066--2232093	6	4.7	6	100	0	56	35	14	0	50	1.43
2233851--2233892	12	3.5	12	81	18	52	40	0	0	59	0.97
2234237--2234269	17	1.9	17	88	11	50	39	3	0	57	1.14
2234952--2235032	28	2.7	30	75	12	78	46	0	6	46	1.27
2235214--2235257	21	2.1	21	83	8	54	29	6	6	56	1.51
2236129--2236181	14	3.9	14	78	9	56	45	0	0	54	0.99
2238249--2238277	14	2.0	15	93	6	51	20	27	13	37	1.91
2238476--2238518	22	2.0	22	90	9	70	60	0	0	39	0.97
2238698--2238769	31	2.3	30	83	9	83	55	2	1	40	1.23
2239678--2239716	13	3.0	13	82	10	53	25	0	0	74	0.82
2240217--2240263	21	2.3	22	78	14	55	40	4	0	55	1.19
2241161--2241185	2	12.5	2	100	0	50	48	0	0	52	1.00
2244776--2244810	12	3.1	12	92	8	56	40	0	0	60	0.97
2244792--2244848	16	3.6	16	73	4	53	43	0	0	56	0.99
2244806--2244849	21	2.0	21	82	4	52	43	0	0	56	0.99
2247027--2247052	8	3.2	8	100	0	52	23	23	11	42	1.86
2251987--2252041	26	2.2	26	83	3	67	45	3	1	49	1.30
2252015--2252073	29	2.0	31	86	6	86	54	0	0	45	0.99
2252037--2252096	18	3.1	19	76	13	59	53	0	0	46	1.00
2252058--2252108	24	2.2	24	82	3	59	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2252744--2252798	14	4.0	14	72	11	51	50	0	3	45	1.19
2255322--2255365	22	2.0	23	90	4	72	54	0	0	45	0.99
2255322--2255374	22	2.3	22	87	6	70	54	0	0	45	0.99
2255586--2255658	29	2.6	27	72	8	65	34	5	1	58	1.29
2258999--2259054	17	3.4	17	70	9	53	26	0	3	69	1.04
2259006--2259063	17	3.3	18	73	7	57	29	0	3	67	1.07
2263663--2263707	12	3.7	12	79	5	54	48	0	0	51	1.00
2263898--2263922	12	2.1	12	100	0	50	40	0	16	44	1.47
2264686--2264728	16	2.7	16	81	0	59	67	0	0	32	0.91
2265954--2265985	2	16.0	2	100	0	64	0	50	0	50	1.00
2267897--2267974	34	2.4	34	89	4	115	38	16	21	23	1.93
2271322--2271359	19	2.0	20	84	5	51	39	0	5	55	1.23
2271242--2271599	174	2.1	175	97	1	677	47	5	7	40	1.53
2272153--2272196	23	1.9	23	100	0	88	52	9	2	36	1.46
2272153--2272193	11	3.6	11	87	6	64	56	7	2	34	1.40
2272697--2272730	18	1.9	17	94	5	59	64	5	5	23	1.38
2273008--2273051	22	2.0	22	86	4	63	54	0	0	45	0.99
2280820--2280846	2	13.5	2	100	0	54	48	0	0	51	1.00
2283327--2283363	12	2.9	14	80	19	53	67	0	0	32	0.91
2283829--2283878	26	1.9	26	88	8	75	50	2	2	46	1.24
2286099--2286167	29	2.3	29	80	11	86	50	0	0	49	1.00
2295582--2295638	16	3.7	15	75	11	53	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2295578--2295642	28	2.3	29	81	7	80	61	0	0	38	0.96
2295598--2295643	16	2.8	16	80	6	56	58	0	0	41	0.98
2301195--2301224	11	2.6	11	94	5	51	30	0	0	70	0.88
2301203--2301269	21	3.2	21	85	2	91	32	0	1	65	1.02
2301214--2301255	9	4.3	9	83	16	57	30	0	2	66	1.04
2301265--2301298	15	2.2	16	89	5	52	35	0	0	64	0.94
2303910--2303942	8	4.2	8	84	7	50	0	0	12	87	0.53
2303910--2303934	13	1.9	13	100	0	50	0	0	12	88	0.53
2303915--2303952	15	2.5	15	87	8	51	2	2	10	84	0.83
2304645--2304706	22	2.9	22	78	2	72	48	0	1	50	1.10
2304651--2304718	22	3.1	22	71	23	63	50	0	0	50	1.00
2304715--2304827	47	2.4	45	77	10	109	58	0	1	39	1.09
2304793--2304916	12	9.4	13	66	23	55	56	0	0	43	0.99
2304789--2304916	45	2.7	48	78	12	158	56	0	0	43	0.99
2305271--2305298	3	9.3	3	100	0	56	67	0	0	32	0.91
2307328--2307360	2	16.5	2	100	0	66	0	48	0	51	1.00
2311517--2311565	13	3.6	13	76	10	53	36	2	2	59	1.21
2327190--2327297	24	4.3	24	70	23	80	46	1	1	50	1.23
2327473--2327520	21	2.3	21	85	0	69	33	6	4	56	1.44
2331787--2331830	22	1.9	24	86	9	65	34	0	2	63	1.07
2331779--2331836	25	2.3	25	80	14	66	36	0	1	62	1.06
2331838--2331876	20	2.0	20	85	10	53	64	5	0	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2331922--2331952	10	3.1	10	95	0	53	61	0	0	38	0.96
2331923--2332005	41	2.0	43	85	7	116	56	1	1	40	1.15
2331913--2332038	51	2.4	52	81	6	148	59	1	0	38	1.13
2333608--2333650	14	2.8	16	79	13	54	53	18	0	27	1.45
2334533--2334583	27	1.9	27	84	11	70	47	0	5	47	1.26
2334531--2334593	27	2.3	27	78	8	65	53	0	4	41	1.22
2335159--2335193	12	3.0	12	91	4	54	91	0	8	0	0.42
2335312--2335387	38	2.0	38	94	0	134	39	10	9	40	1.72
2338967--2339053	6	15.0	6	73	10	65	49	1	0	49	1.08
2338983--2339055	27	2.5	28	86	8	94	53	0	0	46	1.00
2347063--2347145	31	2.9	28	81	13	96	53	0	2	44	1.13
2347834--2347897	33	1.9	34	90	3	103	59	3	4	32	1.34
2347834--2347881	17	2.8	17	67	0	51	58	2	6	33	1.35
2351361--2351402	20	2.2	19	86	4	57	42	4	0	52	1.22
2352164--2352239	25	3.0	23	72	22	64	44	0	1	53	1.08
2355673--2355724	15	3.5	15	78	5	61	51	1	1	44	1.23
2358215--2358284	31	2.2	32	85	7	99	52	0	2	44	1.15
2358583--2358671	46	1.9	46	81	4	108	41	1	0	57	1.06
2361302--2361353	15	3.4	15	74	10	52	50	1	1	46	1.23
2362564--2362605	20	2.2	19	86	4	57	42	4	0	52	1.22
2372581--2372607	2	13.5	2	100	0	54	0	51	0	48	1.00
2373984--2374018	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2374684--2374750	17	3.9	17	79	13	66	40	0	0	59	0.97
2374694--2374799	34	3.1	35	76	11	96	51	1	0	46	1.11
2375389--2375419	2	15.5	2	93	0	53	48	0	3	48	1.17
2378858--2378901	4	11.0	4	85	0	52	45	6	0	47	1.29
2378858--2378901	10	4.4	10	85	0	52	45	6	0	47	1.29
2382834--2382858	7	3.6	7	100	0	50	12	0	0	88	0.53
2383008--2383045	2	20.0	2	84	10	53	47	0	2	50	1.15
2383697--2383721	2	12.5	2	100	0	50	52	0	0	48	1.00
2383848--2383880	18	1.9	18	88	11	52	9	24	0	66	1.20
2387282--2387319	2	19.0	2	94	0	67	47	0	2	50	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20