genome.fa.s140.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold140
Parameters: 2 7 7 80 10 50 1000
Length:  3130556

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  20  of  20  ( 2326 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3091512--3091562	25	2.0	27	84	7	70	31	1	5	60	1.31
3091679--3091719	2	20.5	2	100	0	82	48	0	0	51	1.00
3095078--3095202	20	5.7	20	72	18	97	41	11	16	31	1.83
3096029--3096090	28	2.2	28	91	0	97	20	16	29	33	1.94
3097292--3097349	12	4.8	12	74	17	50	1	3	12	82	0.86
3097317--3097347	8	4.0	8	91	8	55	0	0	12	87	0.55
3097317--3097346	15	2.0	15	100	0	60	0	0	13	86	0.57
3103105--3103232	52	2.5	52	94	3	224	30	17	17	33	1.94
3103306--3103372	33	2.0	33	88	0	98	40	13	11	34	1.81
3103328--3103352	13	1.9	13	100	0	50	32	16	16	36	1.90
3104131--3104224	43	2.2	43	100	0	188	31	17	23	27	1.96
3103970--3104394	213	2.0	212	98	1	816	36	14	25	23	1.93
3104413--3105270	49	17.6	49	84	4	1137	31	17	25	25	1.97
3104346--3105270	98	9.4	98	92	3	1334	31	17	25	24	1.97
3105270--3105645	67	5.6	68	91	2	611	18	17	34	29	1.94
3105270--3105645	34	11.2	34	91	2	611	18	17	34	29	1.94
3105270--3105645	101	3.7	101	96	1	686	18	17	34	29	1.94
3105627--3105916	107	2.8	101	80	11	279	33	12	32	21	1.90
3105647--3105878	34	6.8	34	83	5	263	34	12	31	21	1.91
3105647--3105909	34	7.7	34	81	5	241	34	12	31	21	1.91
3106972--3107005	8	4.4	8	92	3	52	0	5	2	91	0.51
3106965--3107007	15	2.8	16	82	10	54	0	6	6	86	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3107247--3107286	16	2.4	17	79	12	55	5	5	10	80	1.02
3114195--3114322	52	2.5	52	94	3	224	30	17	17	33	1.94
3114396--3114462	33	2.0	33	88	0	98	40	13	11	34	1.81
3114418--3114442	13	1.9	13	100	0	50	32	16	16	36	1.90
3115540--3115640	32	3.1	32	91	1	157	34	9	16	38	1.82
3115538--3115635	19	5.8	18	66	28	63	33	10	16	39	1.82
3115677--3115701	13	1.9	13	100	0	50	32	16	16	36	1.90
3115690--3115838	52	2.9	50	87	6	199	34	18	16	30	1.92
3125427--3125504	41	1.9	41	83	0	102	26	10	6	56	1.57
3126337--3126384	14	3.4	14	75	11	53	70	2	0	27	0.98
3126339--3126382	17	2.6	17	82	10	63	70	2	0	27	0.99
3126394--3126446	14	3.9	14	71	14	56	50	0	0	49	1.00
3126811--3126846	18	1.9	19	88	5	56	44	0	0	55	0.99
3127649--3127687	19	2.0	20	85	5	53	43	0	0	56	0.99
3128400--3128437	19	2.0	20	94	5	69	44	0	0	55	0.99
3128401--3128473	19	4.1	18	77	13	62	46	0	0	53	1.00
3128405--3128469	18	3.6	19	75	15	59	47	0	0	52	1.00
3128406--3128478	17	4.1	18	70	21	55	47	0	0	52	1.00
3128436--3128486	16	3.1	16	71	23	52	47	0	0	52	1.00
3128431--3128505	32	2.4	32	72	14	75	46	2	0	50	1.15
3128501--3128615	57	2.0	57	94	0	203	34	9	5	50	1.57
3128910--3128934	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3129656--3129705	18	2.8	18	76	8	57	34	2	10	54	1.45
3129666--3129727	27	2.3	27	85	2	79	33	8	9	48	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20

The End!