genome.fa.s140.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold140
Parameters: 2 7 7 80 10 50 1000
Length:  3130556

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  2  of  20  ( 2326 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228035--228064	2	15.0	2	100	0	60	50	0	0	50	1.00
228857--228939	42	2.0	42	83	4	105	36	3	22	37	1.72
242710--242735	2	13.0	2	100	0	52	0	50	0	50	1.00
244730--244770	2	20.5	2	100	0	82	51	0	0	48	1.00
246756--246814	24	2.4	26	75	11	61	38	1	0	59	1.08
246829--246882	17	3.3	17	77	12	60	62	1	0	35	1.06
246836--246885	17	3.1	17	75	16	61	66	0	0	34	0.92
246838--246885	16	3.1	16	77	17	64	66	0	0	33	0.92
246817--246885	31	2.2	30	82	12	84	63	1	0	34	1.03
247335--247385	21	2.5	21	87	9	70	54	1	0	43	1.11
247727--247764	4	9.5	4	94	0	67	26	2	23	47	1.65
252162--252224	16	3.9	16	70	15	58	22	12	22	42	1.87
253269--253414	16	9.2	16	73	11	122	30	17	13	39	1.87
253269--253414	32	4.6	32	76	5	152	30	17	13	39	1.87
253348--253391	15	2.8	15	86	6	52	34	15	9	40	1.79
263069--263104	19	1.9	19	88	5	56	50	8	2	38	1.47
263103--263175	21	3.5	19	78	12	56	58	0	1	39	1.06
263082--263175	43	2.2	42	81	11	102	58	2	1	38	1.17
263123--263175	11	4.9	11	78	19	58	58	0	0	41	0.98
263104--263202	43	2.3	42	79	17	107	57	0	2	40	1.10
263342--263382	21	1.9	22	85	5	57	58	4	0	36	1.20
263883--263933	16	3.2	16	86	5	68	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273320--273373	4	13.5	4	92	0	54	50	11	0	38	1.38
273327--273371	18	2.5	18	100	0	90	51	13	0	35	1.41
273323--273373	22	2.3	22	93	0	84	50	11	0	37	1.39
274253--274307	23	2.5	22	79	11	67	43	3	1	50	1.30
274526--274588	27	2.3	28	83	8	76	38	1	9	50	1.44
281840--281884	2	22.5	2	90	0	72	46	4	0	48	1.22
282660--282691	5	6.8	5	96	3	50	87	0	12	0	0.54
283015--283044	16	1.9	16	93	6	53	63	0	0	36	0.95
284354--284400	24	2.0	24	100	0	94	38	6	17	38	1.75
284991--285027	18	2.1	18	100	0	74	37	10	18	32	1.86
287551--287589	21	1.9	21	89	5	62	35	0	0	64	0.94
290726--290762	16	2.3	16	100	0	74	51	5	8	35	1.55
290726--290769	16	2.8	16	93	3	63	50	4	6	38	1.50
293927--293955	14	2.0	15	93	6	51	31	0	0	68	0.89
294063--294090	8	3.5	8	100	0	56	89	10	0	0	0.49
294389--294421	17	1.9	17	93	0	57	54	0	0	45	0.99
294630--294673	19	2.4	19	84	3	54	59	0	0	40	0.98
296777--296846	25	3.0	23	72	22	65	71	0	0	28	0.86
296805--296856	16	3.2	16	78	5	52	71	0	0	28	0.87
296834--296920	16	4.8	18	69	19	56	56	1	0	42	1.07
296829--296921	20	4.4	21	73	15	68	56	1	0	41	1.06
296785--296921	6	20.4	7	72	16	53	61	0	0	37	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296831--296920	36	2.5	38	76	16	95	56	1	0	42	1.06
301348--301405	17	3.3	18	75	20	61	60	1	0	37	1.07
301348--301385	14	2.8	14	85	14	53	63	0	0	36	0.95
301361--301423	33	1.9	32	84	9	83	55	3	0	41	1.16
309799--309832	13	2.6	13	85	0	50	47	0	0	52	1.00
309823--309865	18	2.4	17	80	7	50	58	4	0	37	1.19
315305--316338	228	4.5	228	83	1	987	21	23	24	29	1.99
315284--316338	456	2.3	455	82	1	1214	21	23	24	29	1.99
322330--322366	2	18.5	2	100	0	74	51	0	0	48	1.00
325653--325739	20	4.2	20	72	16	61	62	0	0	37	0.96
325734--325816	43	1.9	43	85	4	114	56	0	3	39	1.17
328868--328896	2	14.5	2	100	0	58	48	0	51	0	1.00
334875--334914	21	1.9	21	90	10	64	60	0	0	40	0.97
335331--335370	5	8.0	5	89	10	64	80	0	20	0	0.72
336846--336896	18	2.9	17	82	5	57	58	1	0	39	1.09
336780--336942	80	2.0	85	81	12	198	60	0	1	38	1.09
337779--337835	21	3.0	19	85	14	82	54	0	0	45	0.99
338368--338399	3	10.7	3	100	0	64	34	0	0	65	0.93
339179--339210	2	16.0	2	100	0	64	50	0	0	50	1.00
341217--341264	4	12.0	4	86	0	51	45	6	4	43	1.48
341217--341252	14	2.6	14	95	0	63	50	8	0	41	1.33
348365--348408	2	23.5	2	84	13	58	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349354--349385	11	2.9	11	90	0	55	68	0	0	31	0.90
349850--349897	25	1.9	25	86	0	69	64	4	4	27	1.30
350867--350905	3	13.3	3	89	5	62	69	0	30	0	0.89
351276--351311	3	12.0	3	100	0	72	33	0	0	66	0.92
353373--353442	30	2.4	30	87	2	97	28	17	7	47	1.74
353470--353528	30	2.0	30	89	0	91	30	1	25	42	1.65
358066--358102	2	19.0	2	94	5	67	48	0	0	51	1.00
359038--359089	22	2.4	22	72	15	54	55	1	0	42	1.10
364935--365064	65	2.0	65	96	0	242	39	25	10	24	1.88
365774--365809	18	2.0	18	100	0	72	5	44	22	27	1.75
366739--366803	14	4.7	13	72	16	51	35	0	1	63	1.04
366723--366784	14	4.4	13	75	20	54	30	0	1	67	1.00
367956--367983	2	14.0	2	100	0	56	50	0	0	50	1.00
371237--371283	3	15.7	3	100	0	94	65	0	34	0	0.93
371621--371654	17	2.0	17	88	0	50	2	2	8	85	0.80
375775--375804	2	15.0	2	100	0	60	50	0	0	50	1.00
376705--376738	16	2.1	17	88	5	52	41	5	0	52	1.25
380057--380104	15	3.2	14	77	11	51	79	0	2	18	0.84
380057--380104	7	6.4	7	79	11	51	79	0	2	18	0.84
380411--380448	15	2.7	14	84	11	51	0	23	0	76	0.79
380417--380448	15	2.1	15	94	0	55	0	21	0	78	0.76
380410--380452	11	3.7	11	81	9	50	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380474--380665	74	2.6	68	77	16	206	55	8	2	33	1.41
381976--382010	16	2.2	16	89	0	52	42	0	0	57	0.99
382057--382119	24	2.7	23	80	11	58	61	3	0	34	1.12
382428--382453	13	2.0	13	100	0	52	23	0	0	76	0.78
382427--382517	43	2.1	43	81	2	101	38	0	1	60	1.04
382560--382605	18	2.6	18	92	0	83	39	2	0	58	1.10
382831--382979	42	3.7	41	80	7	164	29	17	15	37	1.91
383603--383657	18	3.2	18	77	15	71	45	0	1	52	1.11
383587--383645	15	3.9	15	73	18	50	40	0	1	57	1.09
383583--383734	33	4.6	34	72	12	129	42	1	1	54	1.20
383601--383745	36	4.2	36	72	11	124	40	2	2	55	1.23
384162--384226	22	2.8	22	79	6	67	55	4	6	33	1.45
384151--384212	22	2.7	23	78	9	65	54	4	8	32	1.51
385820--385879	20	3.1	19	71	20	52	63	0	0	36	0.95
387980--388010	16	2.0	16	93	6	55	51	0	0	48	1.00
392274--392351	34	2.3	34	100	0	156	44	14	17	23	1.85
394681--394716	2	18.0	2	94	0	63	47	0	2	50	1.15
399596--399621	5	5.2	5	100	0	52	42	0	0	57	0.98
401539--401590	22	2.3	24	77	12	65	59	0	0	40	0.97
401561--401593	16	2.1	16	88	11	50	60	0	0	39	0.97
402134--402209	22	3.5	22	75	10	68	64	2	0	32	1.07
402158--402228	30	2.4	30	83	9	83	61	1	0	36	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402125--402223	22	4.6	22	70	18	66	61	2	0	36	1.07
402186--402240	20	2.8	20	81	13	60	61	0	0	38	0.96
404532--404556	12	2.1	12	100	0	50	76	0	0	24	0.80
407780--407838	16	3.9	16	76	17	63	44	1	1	52	1.21
407778--407821	13	3.1	14	75	18	54	50	4	0	45	1.22
407979--408015	13	2.8	14	84	12	51	48	0	2	48	1.15
407993--408022	16	1.9	16	93	6	53	50	0	0	50	1.00
407977--408036	29	2.1	28	87	3	84	51	0	1	46	1.10
416260--416336	37	2.1	37	92	0	127	42	11	0	45	1.40
417344--417382	17	2.2	18	86	4	53	56	0	0	43	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20