genome.fa.s140.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold140
Parameters: 2 7 7 80 10 50 1000
Length:  3130556

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  4  of  20  ( 2326 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615628--615705	40	1.9	39	82	5	93	44	3	0	51	1.19
615711--615759	2	24.5	2	100	0	98	51	0	0	48	1.00
622311--622336	4	6.5	4	100	0	52	76	0	0	23	0.78
622520--622596	21	3.5	20	85	7	82	70	0	0	29	0.88
622520--622596	34	2.3	32	76	12	77	70	0	0	29	0.88
623215--623257	15	2.7	15	82	7	50	48	2	0	48	1.14
623258--623292	18	1.9	18	94	0	61	34	0	0	65	0.93
623261--623311	25	2.0	25	81	7	59	37	0	0	62	0.95
623225--623307	8	11.0	8	74	10	68	38	0	0	61	0.96
623267--623318	25	2.1	24	82	3	59	38	0	0	61	0.96
623590--623654	27	2.4	26	77	7	67	46	0	1	52	1.10
631106--631181	37	2.1	37	97	0	143	22	10	7	59	1.56
631106--631166	21	3.1	21	65	29	62	26	9	9	54	1.64
637323--637347	12	2.1	12	100	0	50	44	8	0	48	1.32
639758--639797	12	3.4	12	93	3	64	0	7	0	92	0.38
639758--639804	16	2.9	16	87	3	67	2	8	0	89	0.57
639757--639804	20	2.3	20	89	7	69	2	10	0	87	0.62
639769--639804	10	3.5	10	88	3	54	2	5	0	91	0.49
639767--639797	1	31.0	1	93	0	53	0	3	0	96	0.21
639758--639797	11	3.6	11	90	6	55	0	7	0	92	0.38
640179--640206	3	9.3	3	100	0	56	67	0	32	0	0.91
648856--648887	3	10.7	3	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649088--649123	2	18.0	2	94	0	63	47	0	2	50	1.15
649199--649244	16	2.9	16	78	9	51	43	0	0	56	0.99
649352--649401	3	16.7	3	87	0	73	36	34	0	30	1.58
649337--649401	9	7.0	9	84	6	58	33	38	1	26	1.66
651252--651283	12	2.7	12	95	0	55	53	0	0	46	1.00
651962--651995	16	2.1	16	89	10	52	35	0	2	61	1.11
652650--652682	2	16.5	2	100	0	66	48	0	0	51	1.00
653630--653683	18	2.9	18	81	13	65	68	1	1	27	1.10
654836--654875	2	20.5	2	94	5	73	52	0	0	47	1.00
658105--658135	6	5.3	6	96	3	55	87	0	12	0	0.55
659850--659956	18	5.4	18	75	14	61	5	53	4	36	1.45
659855--660066	21	9.8	21	70	18	98	5	55	3	35	1.40
659894--660060	24	7.6	24	68	22	100	6	56	1	35	1.36
659898--660060	63	2.6	63	93	5	267	6	56	1	34	1.36
659976--660019	18	2.4	18	88	0	61	9	54	2	34	1.44
659961--660042	42	2.0	42	87	4	121	7	56	1	35	1.35
661653--661690	19	2.0	19	90	10	60	28	0	26	44	1.54
661653--661689	9	3.9	10	79	13	51	29	0	24	45	1.53
663296--663373	5	16.0	5	71	28	62	58	0	0	41	0.98
663299--663404	8	14.0	8	75	18	93	59	0	0	40	0.97
665518--665566	21	2.5	18	81	15	53	65	2	0	32	1.04
665516--665558	19	2.3	18	76	4	50	65	2	0	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668115--668147	2	16.5	2	93	0	57	45	0	3	51	1.16
676551--676584	15	2.3	15	90	5	52	61	5	0	32	1.20
693973--694009	19	1.9	19	94	0	65	48	0	21	29	1.50
695247--695274	4	7.0	4	100	0	56	25	0	0	75	0.81
698400--698458	31	1.9	31	86	10	86	55	0	0	44	0.99
701994--702060	24	2.7	25	70	11	66	65	0	0	34	0.93
702097--702208	16	6.9	16	79	5	102	60	5	0	33	1.19
702095--702208	32	3.5	32	86	5	158	59	5	0	35	1.20
702559--702677	13	9.1	13	72	19	63	60	3	0	36	1.13
702556--702691	19	7.3	19	67	17	70	60	4	0	35	1.17
702546--702620	38	1.9	39	84	7	100	61	0	0	38	0.96
702556--702627	32	2.2	33	85	9	94	63	1	0	34	1.03
710140--710198	18	3.3	18	77	15	68	59	0	0	40	0.97
710140--710198	19	3.3	18	76	21	61	59	0	0	40	0.97
714196--714225	2	15.0	2	100	0	60	50	0	0	50	1.00
716175--716512	163	2.1	166	88	3	497	39	8	8	43	1.67
717677--717707	13	2.3	14	94	5	55	45	0	54	0	0.99
717681--717705	11	2.3	11	100	0	50	44	0	56	0	0.99
718631--718663	15	2.2	15	94	0	57	57	33	6	3	1.38
719112--719142	14	2.1	15	94	5	55	70	0	0	29	0.87
719382--719436	15	3.5	14	76	23	56	41	0	0	58	0.98
719398--719500	21	5.5	19	67	26	60	42	1	0	55	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719383--719473	32	2.7	33	86	6	121	45	1	0	53	1.07
719382--719446	15	4.1	15	73	21	53	43	0	0	56	0.99
719429--719513	27	3.1	27	79	12	84	38	2	0	58	1.11
719480--719537	13	4.4	13	71	26	50	32	3	0	63	1.11
720245--720307	22	2.7	22	85	11	74	61	0	1	36	1.05
720245--720285	22	1.9	22	95	5	75	60	0	0	39	0.96
720290--720322	17	1.9	17	93	0	57	63	0	0	36	0.95
720404--720466	14	4.6	14	69	26	55	52	0	0	47	1.00
720382--720447	24	2.7	23	84	11	78	51	0	0	48	1.00
721828--721883	2	28.0	2	81	0	67	3	44	3	48	1.37
722056--722082	3	9.0	3	100	0	54	66	0	33	0	0.92
726821--726876	29	1.9	29	92	7	96	33	0	16	50	1.45
727276--727325	24	2.1	24	92	0	82	32	18	22	28	1.97
728223--728247	13	1.9	13	100	0	50	72	0	0	28	0.86
728982--729021	2	20.0	2	100	0	80	50	0	0	50	1.00
730425--730492	16	4.0	17	72	18	61	50	0	0	50	1.00
730442--730529	27	3.2	28	75	19	78	56	0	0	43	0.99
730470--730528	18	3.1	18	81	13	66	59	0	0	40	0.97
730470--730529	19	3.1	19	79	13	68	60	0	0	40	0.97
730495--730540	19	2.5	19	85	3	58	65	2	2	30	1.16
730202--730826	343	1.8	342	89	1	991	40	10	8	40	1.70
730747--730802	28	2.0	30	82	6	57	51	0	1	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730768--730822	16	3.4	17	73	19	62	49	1	0	49	1.11
730768--730822	15	3.4	16	72	27	53	49	1	0	49	1.11
730768--730828	17	3.3	19	80	19	60	49	1	0	49	1.10
731614--731703	20	4.6	18	78	13	81	60	2	1	36	1.17
731649--731711	29	2.2	29	83	11	76	57	0	0	42	0.99
731655--731711	28	2.1	26	87	9	78	57	0	0	42	0.98
735422--735481	30	2.0	30	100	0	120	13	20	13	53	1.72
735616--735678	23	2.7	24	66	24	62	23	26	6	42	1.78
741315--741373	27	2.1	30	87	9	88	44	18	16	20	1.87
741518--741550	16	2.0	17	88	5	50	45	0	3	51	1.16
743321--743358	2	19.0	2	100	0	76	50	0	0	50	1.00
747642--747686	15	2.7	17	83	16	51	62	0	0	37	0.96
748404--748484	40	2.0	40	95	0	144	38	16	13	32	1.87
752085--752161	31	2.5	33	78	16	92	48	2	0	49	1.15
752107--752144	13	3.0	13	80	7	51	47	2	0	50	1.15
752093--752149	25	2.3	26	80	17	68	50	3	0	45	1.18
753613--753688	20	4.1	19	69	17	61	47	0	0	52	1.00
756801--756882	37	2.2	37	78	6	94	40	4	0	54	1.22
762329--762406	9	8.6	9	68	13	52	48	1	1	48	1.17
762396--762445	20	2.5	19	81	15	57	44	2	0	54	1.11
762687--762724	20	1.9	19	89	5	58	50	0	0	50	1.00
762684--762721	17	2.2	17	86	9	51	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
762675--762744	23	3.0	23	66	15	54	47	0	0	52	1.00
763046--763085	21	1.9	21	89	0	62	70	0	0	30	0.88
767301--767346	20	2.3	20	85	14	60	69	2	0	28	1.00
767840--767959	18	7.1	18	69	17	78	47	0	0	51	1.06
767854--767905	15	3.3	15	86	8	59	34	0	0	65	0.93
768986--769096	6	19.0	6	76	20	78	47	1	0	50	1.11
768972--769049	22	3.2	23	69	22	59	50	1	0	48	1.09
768986--769105	18	6.9	16	75	20	100	46	2	0	50	1.14
768976--769073	51	1.9	52	91	2	162	51	1	0	47	1.07
768985--769090	40	2.6	41	74	21	55	47	0	0	51	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20