genome.fa.s154.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold154
Parameters: 2 7 7 80 10 50 1000
Length:  1945843

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1433 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1780032--1780119	43	2.0	43	86	0	122	28	18	26	27	1.98
1780112--1780660	96	5.8	96	87	3	759	20	18	31	29	1.96
1780130--1780661	32	16.7	32	81	6	593	20	18	31	29	1.96
1780804--1780987	34	5.8	32	70	13	110	36	14	28	20	1.92
1780923--1781180	34	7.8	33	74	10	136	37	13	29	19	1.90
1780943--1781083	66	2.1	65	79	8	149	36	11	29	21	1.89
1781071--1781299	30	7.4	30	82	5	226	32	15	32	20	1.93
1781048--1781299	90	2.7	96	81	5	277	33	15	31	20	1.93
1781342--1781493	74	2.1	74	96	0	277	34	6	28	29	1.83
1781342--1781453	35	3.1	34	66	22	84	34	7	28	29	1.84
1782601--1782635	16	2.2	16	89	0	52	0	5	5	88	0.63
1782600--1782639	19	2.0	20	85	4	55	0	7	5	87	0.66
1789776--1789991	87	2.5	88	89	0	326	27	25	18	28	1.98
1789917--1790214	39	6.9	39	68	21	157	28	27	18	26	1.98
1789871--1790138	136	2.0	136	94	0	473	27	26	17	28	1.98
1789872--1790175	136	2.2	136	89	1	457	27	26	18	27	1.98
1790008--1790263	88	2.9	87	89	0	386	27	26	19	27	1.99
1789784--1790315	224	2.4	223	87	2	742	27	26	18	28	1.98
1790180--1790459	52	5.6	49	77	7	251	25	26	16	31	1.97
1790180--1790415	101	2.3	101	86	2	305	25	27	16	30	1.97
1791308--1791335	13	2.2	13	100	0	56	28	14	17	39	1.89
1791288--1791353	33	2.0	33	88	5	98	30	15	13	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797015--1797039	13	1.9	13	100	0	50	32	16	16	36	1.90
1797950--1798047	33	3.0	33	87	0	142	31	17	25	25	1.97
1805704--1805756	20	2.7	19	85	5	61	32	18	13	35	1.90
1805784--1805821	20	1.9	20	94	0	67	26	18	13	42	1.87
1811125--1811443	151	2.1	153	80	5	342	26	11	18	43	1.83
1812054--1812079	13	2.0	13	100	0	52	38	15	15	30	1.88
1812151--1812242	46	2.0	46	100	0	184	45	15	13	26	1.82
1814567--1814625	13	4.1	13	73	23	55	32	13	16	37	1.88
1814580--1814643	19	3.7	18	76	23	75	32	14	17	35	1.89
1814567--1814651	32	2.7	32	96	0	152	31	14	17	36	1.90
1824131--1824171	22	1.9	21	90	5	64	51	0	12	36	1.40
1825635--1825714	31	2.5	31	79	4	88	40	12	20	27	1.88
1825796--1825846	20	2.5	21	81	9	61	33	17	11	37	1.86
1829685--1829781	45	2.2	45	94	0	167	21	19	19	39	1.93
1830107--1830254	73	2.0	73	97	0	278	24	12	16	45	1.83
1830839--1831298	133	3.5	132	80	4	462	18	25	13	43	1.86
1830866--1831284	66	6.3	66	77	4	405	17	25	13	43	1.85
1839425--1839455	13	2.4	13	100	0	62	38	16	16	29	1.90
1839406--1839473	33	2.1	33	91	0	109	41	13	17	27	1.87
1839531--1839556	13	2.0	13	100	0	52	38	15	15	30	1.88
1840641--1840723	34	2.4	34	93	0	139	48	19	3	28	1.66
1842684--1842737	20	2.7	20	91	0	81	37	12	12	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1842705--1842813	48	2.3	47	82	10	132	37	14	13	33	1.86
1846731--1846800	35	1.9	36	85	5	97	61	8	4	25	1.43
1846877--1846923	17	2.9	16	82	14	60	4	12	0	82	0.80
1846877--1846941	22	2.9	22	78	15	62	4	15	1	78	0.99
1846881--1846918	17	2.2	18	90	9	62	2	13	0	84	0.73
1848696--1848736	19	2.2	19	91	4	66	63	2	2	31	1.20
1850055--1850089	2	17.5	2	100	0	70	0	48	0	51	1.00
1851107--1851133	5	5.4	5	100	0	54	62	0	37	0	0.95
1851616--1851644	3	9.7	3	100	0	58	34	34	0	31	1.58
1851669--1851727	15	3.9	15	76	8	66	38	35	1	23	1.65
1851669--1851716	12	3.8	12	79	15	51	39	33	2	25	1.67
1852673--1852713	14	2.9	15	79	13	52	21	0	4	73	1.02
1854354--1854401	24	2.0	24	83	4	60	52	2	2	43	1.24
1854446--1854505	29	2.1	29	87	6	86	41	15	3	40	1.63
1855116--1855156	19	2.1	20	86	4	57	41	2	2	53	1.27
1859088--1859114	13	2.1	13	100	0	54	40	14	14	29	1.86
1862204--1862279	20	3.8	20	81	6	100	34	10	9	46	1.70
1862204--1862279	40	1.9	40	89	5	118	34	10	9	46	1.70
1865660--1865724	26	2.3	29	76	10	73	50	4	0	44	1.22
1865784--1865840	20	2.6	23	84	15	77	49	1	0	49	1.11
1865820--1865860	16	2.6	16	81	14	50	53	0	0	46	1.00
1865943--1865999	18	3.4	18	77	22	70	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1865953--1865988	14	2.5	15	95	4	65	55	0	0	44	0.99
1867588--1867649	14	4.1	14	73	19	54	56	1	1	40	1.19
1867582--1867657	23	3.4	22	74	15	59	57	1	2	38	1.21
1867587--1867651	15	4.4	14	76	14	60	55	1	1	41	1.18
1868085--1868134	15	3.0	16	85	11	57	48	0	8	44	1.32
1868123--1868171	18	2.7	18	80	3	53	34	2	0	63	1.06
1869032--1869066	17	2.2	17	90	10	56	28	0	0	71	0.86
1869804--1870071	58	4.6	58	71	9	145	26	10	15	48	1.76
1871701--1871747	24	2.0	24	91	0	76	27	17	12	42	1.85
1871703--1871754	24	2.2	24	85	0	68	28	19	9	42	1.82
1871823--1871869	20	2.3	21	76	23	64	34	12	19	34	1.89
1877475--1877516	20	2.1	21	82	13	61	47	0	0	52	1.00
1877952--1878028	16	4.8	16	69	12	50	31	1	12	54	1.47
1879383--1879408	13	2.0	13	100	0	52	30	15	15	38	1.88
1880094--1880137	21	2.1	21	83	8	54	25	31	4	38	1.76
1881946--1881971	13	2.0	13	100	0	52	38	15	15	30	1.88
1882173--1882204	8	4.0	8	100	0	64	62	25	0	12	1.30
1884058--1884088	15	2.1	15	93	0	53	12	22	16	48	1.80
1885892--1885936	21	2.1	21	84	8	56	22	20	4	53	1.63
1888152--1888177	13	2.0	13	100	0	52	30	15	15	38	1.88
1901899--1902016	48	2.5	48	80	5	134	42	20	7	29	1.80
1901889--1902062	46	3.7	46	73	11	129	40	17	9	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1905857--1905886	15	2.0	15	100	0	60	26	26	0	46	1.53
1907027--1907072	20	2.3	19	82	10	56	41	17	10	30	1.84
1907133--1907203	20	3.5	20	75	17	67	40	18	12	28	1.87
1906976--1907185	113	1.9	112	84	1	285	38	16	14	30	1.89
1912360--1912422	19	3.6	19	76	24	84	33	12	19	34	1.89
1912379--1912403	13	1.9	13	100	0	50	36	16	16	32	1.90
1912360--1912430	32	2.2	32	100	0	142	32	12	19	35	1.90
1918585--1918614	15	2.0	15	100	0	60	20	13	6	60	1.55
1920139--1920163	13	1.9	13	100	0	50	32	16	16	36	1.90
1920119--1920183	33	2.0	33	90	0	103	32	16	15	35	1.91
1920213--1920284	19	3.7	19	94	1	117	37	18	15	29	1.91
1922610--1922659	21	2.4	21	83	9	59	48	0	20	32	1.50
1922617--1922659	21	2.0	22	86	4	61	51	0	20	27	1.48
1927243--1927273	3	10.3	3	92	0	53	29	35	0	35	1.58
1928791--1928843	20	2.7	20	93	0	88	41	13	9	35	1.76
1928945--1929002	19	3.0	20	85	7	84	34	17	15	32	1.91
1928986--1929010	13	1.9	13	100	0	50	32	16	16	36	1.90
1928967--1929031	33	2.0	32	88	8	96	38	15	15	30	1.88
1931342--1931380	19	2.1	18	90	4	60	74	0	5	20	1.01
1936952--1937680	391	1.9	391	81	2	910	32	16	17	33	1.92
1939174--1939199	13	2.0	13	100	0	52	38	15	15	30	1.88
1941413--1941457	21	2.1	21	84	8	56	53	4	20	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1943261--1943291	15	2.1	15	93	0	53	48	16	22	12	1.80
1945518--1945564	21	2.3	21	79	20	55	34	19	4	42	1.70
1945520--1945562	20	2.2	19	84	16	52	32	18	4	44	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!