genome.fa.s154.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold154
Parameters: 2 7 7 80 10 50 1000
Length:  1945843

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  3  of  12  ( 1433 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309178--309240	28	2.5	23	73	26	65	31	33	12	22	1.91
309192--309550	28	12.4	29	82	7	401	27	30	17	23	1.97
309192--309549	57	6.2	57	81	6	384	27	30	17	23	1.97
309616--309738	49	2.6	46	76	11	122	20	26	18	34	1.95
310436--310509	20	3.7	20	87	7	114	31	18	12	37	1.88
310431--310509	40	2.0	40	97	0	149	30	21	12	35	1.91
313738--313795	20	2.9	20	76	7	64	31	10	15	43	1.80
313759--313809	20	2.5	21	72	15	54	31	13	13	41	1.84
314797--314961	87	1.9	87	85	5	226	38	20	3	38	1.68
314745--314969	29	7.8	29	74	6	172	37	18	4	39	1.73
316222--316259	6	6.3	6	84	9	51	65	0	2	31	1.06
322632--322708	20	3.8	20	79	6	93	41	11	14	32	1.82
322916--323908	29	34.6	29	87	2	1380	23	16	30	29	1.96
322916--323908	86	11.5	86	88	2	1384	23	16	30	29	1.96
322916--323908	115	8.6	116	87	2	1346	23	16	30	29	1.96
325110--325171	22	2.7	22	82	9	63	1	4	14	79	0.98
332930--332955	13	2.0	13	100	0	52	38	15	15	30	1.88
335010--335174	84	2.0	84	84	4	217	52	3	18	25	1.62
336609--336633	13	1.9	13	100	0	50	36	16	16	32	1.90
338479--338504	13	2.0	13	100	0	52	38	15	15	30	1.88
340873--340926	20	2.7	20	88	5	74	42	16	14	25	1.87
340998--341023	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340980--341043	32	2.0	33	90	3	103	42	15	14	28	1.86
341052--341273	104	2.1	105	98	0	376	43	19	13	24	1.86
345129--345159	15	2.1	15	93	0	53	48	16	22	12	1.80
347239--347276	13	2.9	13	96	0	67	34	18	15	31	1.92
347397--347442	21	2.2	20	81	11	58	32	19	4	43	1.71
349832--349857	13	2.0	13	100	0	52	38	15	15	30	1.88
349814--349877	32	2.0	33	90	3	103	42	15	14	28	1.86
356967--357288	97	3.4	96	80	9	329	37	11	21	29	1.89
356967--357243	91	3.0	92	81	8	319	39	11	20	29	1.87
357010--357293	91	3.1	89	73	17	229	40	10	19	29	1.86
360867--360920	13	4.4	13	75	11	60	74	1	24	0	0.92
362572--363374	97	8.3	97	91	2	1251	29	28	11	29	1.92
362584--363395	383	2.1	385	93	1	1387	29	28	11	29	1.92
364405--364455	20	2.5	21	90	3	77	33	17	7	41	1.79
364768--364841	24	3.1	23	70	18	62	33	0	2	63	1.09
365333--365376	3	14.7	3	100	0	88	34	0	0	65	0.93
366684--366767	40	2.1	40	82	4	98	48	19	4	27	1.68
366724--366917	58	3.3	58	82	6	239	45	20	9	25	1.80
366901--366925	9	2.8	9	100	0	50	48	20	12	20	1.80
366910--367047	58	2.4	57	80	11	140	52	12	11	23	1.72
368477--368521	17	2.6	17	80	16	56	22	2	2	73	1.05
374199--374240	11	3.9	11	81	6	50	2	21	0	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374194--374238	21	2.2	20	88	4	63	2	17	0	80	0.82
376169--376253	20	3.8	20	70	26	71	29	17	10	42	1.83
376158--376303	50	2.9	51	94	2	258	26	18	11	43	1.84
376909--376948	21	1.9	22	85	10	57	22	15	10	52	1.71
388551--389071	71	7.4	71	75	7	413	27	22	13	35	1.92
389048--389143	50	1.9	50	91	0	156	28	32	11	28	1.91
389102--389264	68	2.4	68	82	4	202	36	30	12	20	1.90
389226--389398	73	2.4	73	87	1	231	30	31	12	25	1.93
389226--389423	73	2.7	73	82	4	177	30	32	11	25	1.91
391664--391715	13	4.5	13	71	26	53	38	15	11	34	1.83
391664--391732	33	2.1	33	88	0	102	37	17	13	31	1.88
391761--391815	19	2.8	20	83	5	76	34	16	18	30	1.93
391801--391827	13	2.1	13	100	0	54	40	14	14	29	1.86
392378--392426	20	2.4	21	89	6	82	48	12	6	32	1.65
394136--394210	21	3.7	20	71	21	57	48	0	18	33	1.49
394143--394184	21	2.0	22	85	4	59	52	0	19	28	1.46
397172--397250	38	2.1	38	97	0	149	26	25	5	43	1.75
400450--400543	20	4.7	21	82	15	119	35	17	14	32	1.90
400447--400543	40	2.4	40	96	0	176	35	17	15	31	1.91
402625--402871	89	2.8	88	81	4	273	31	25	8	34	1.85
402583--402884	89	3.4	86	77	9	234	31	24	10	33	1.89
406643--406690	19	2.5	19	96	0	87	25	8	18	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409994--410044	25	2.0	26	96	3	95	15	39	3	41	1.66
412448--412472	9	2.8	9	100	0	50	8	32	0	60	1.26
415540--415573	13	2.6	13	90	0	59	35	0	2	61	1.11
415511--415580	29	2.5	28	79	9	72	38	0	1	60	1.06
416705--416739	19	1.9	17	88	11	52	60	0	0	40	0.97
416708--416754	17	2.6	19	80	9	55	59	2	0	38	1.09
417061--417092	5	6.4	5	92	0	55	56	0	3	40	1.15
418951--419150	100	2.0	102	81	4	235	37	12	12	38	1.79
419305--419371	2	33.5	2	90	0	107	46	0	4	49	1.22
425294--425332	20	2.0	20	90	10	62	30	10	2	56	1.46
427113--427231	13	10.5	12	64	26	55	32	16	13	36	1.88
427095--427170	33	2.3	33	100	0	152	30	19	13	36	1.90
427121--427247	54	2.4	54	93	4	213	33	17	13	35	1.89
427148--427246	33	3.0	33	81	10	112	33	16	14	36	1.88
427280--427333	19	2.8	20	80	8	67	35	12	14	37	1.85
427317--427341	13	1.9	13	100	0	50	32	16	16	36	1.90
427298--427362	32	2.0	32	85	8	87	40	15	13	30	1.86
429855--429914	13	5.1	13	69	22	60	41	13	15	30	1.85
429869--429933	20	3.6	20	73	26	81	41	12	15	30	1.84
429856--429933	33	2.4	33	100	0	156	41	12	15	30	1.85
436135--436187	20	2.7	19	77	5	61	37	13	13	35	1.83
440038--440200	82	2.0	82	88	7	242	42	4	5	47	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440517--440548	2	16.0	2	100	0	64	50	0	0	50	1.00
440640--440823	91	2.0	92	90	4	291	34	10	16	37	1.84
441044--441105	17	3.2	20	78	15	60	43	0	3	53	1.17
441044--441086	20	2.0	22	86	8	63	44	0	4	51	1.22
441057--441118	32	1.9	33	90	3	99	40	0	0	59	0.97
441283--441320	17	2.2	18	85	4	51	18	7	2	71	1.23
441889--441936	25	2.0	24	83	4	60	45	10	0	43	1.38
442195--442324	8	15.0	8	69	24	54	58	0	0	41	0.98
442214--442313	33	3.0	34	83	12	111	57	0	0	43	0.99
442256--442322	24	2.9	23	78	12	75	62	0	0	37	0.95
442149--442324	43	4.1	43	75	19	154	60	0	0	38	1.06
442222--442324	42	2.5	42	83	15	117	58	0	0	41	0.98
442235--442341	38	3.0	34	72	20	85	59	0	0	40	0.97
443373--443434	25	2.4	26	86	5	81	59	0	1	38	1.07
443476--443578	25	3.9	26	71	18	79	33	2	0	62	1.17
443475--443578	27	3.9	26	72	16	88	34	2	0	61	1.17
443485--443594	17	6.5	17	67	19	59	37	2	0	60	1.11
443488--443541	20	2.7	20	74	8	56	33	1	0	64	1.04
445218--445255	18	2.2	17	95	4	67	31	10	18	39	1.85
446587--446762	85	2.1	86	92	1	291	41	5	3	49	1.43
447234--447322	27	3.2	28	79	7	78	38	0	0	61	0.96
447242--447348	32	3.5	28	78	17	99	39	0	0	59	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447288--447340	18	3.2	18	71	20	60	45	0	0	54	0.99
447280--447340	32	1.9	31	93	3	104	42	0	0	57	0.98
447545--447636	30	3.1	29	81	9	105	52	3	4	40	1.38
447594--447671	23	3.4	22	80	8	84	56	2	1	39	1.21
448564--448658	36	2.7	36	73	11	88	57	5	2	34	1.33
449530--449566	17	2.2	17	90	9	58	27	0	0	72	0.84
449551--449593	20	2.2	19	88	12	61	37	0	2	60	1.10
450163--450205	14	2.9	15	86	6	61	86	2	11	0	0.67
450164--450205	21	2.0	21	85	4	57	85	2	11	0	0.68
450164--450197	7	4.9	7	92	0	59	85	0	14	0	0.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12