genome.fa.s154.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold154
Parameters: 2 7 7 80 10 50 1000
Length:  1945843

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1433 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450336--450409	29	2.6	29	100	0	148	48	0	6	44	1.29
451685--451764	7	11.9	7	72	17	71	45	0	0	55	0.99
451685--451767	20	4.2	19	75	16	80	44	0	0	55	0.99
451679--451762	40	2.1	41	84	6	109	42	0	0	57	0.99
452268--452296	10	2.9	10	100	0	58	41	0	17	41	1.49
454245--454306	28	2.2	29	82	2	72	54	0	0	45	0.99
455817--455843	13	2.1	13	100	0	54	48	14	0	37	1.45
457318--457371	11	5.0	11	74	17	51	44	0	3	51	1.19
459650--459701	22	2.4	21	90	9	86	19	9	26	44	1.81
460266--460341	31	2.5	31	91	0	125	27	15	22	34	1.95
460310--460423	37	3.1	38	78	7	119	27	18	19	35	1.95
461589--462071	160	3.0	159	84	2	630	35	18	15	30	1.92
467577--467815	55	4.4	54	87	3	329	29	28	19	23	1.98
467630--468041	204	2.0	208	87	4	591	26	26	19	27	1.99
467688--467980	149	2.0	149	90	2	464	26	27	19	26	1.99
467837--468163	61	5.6	59	80	10	300	25	23	20	30	1.98
468157--468301	42	3.3	45	77	13	140	16	26	11	46	1.80
468324--468425	41	2.5	39	80	10	107	19	27	9	43	1.82
474649--474868	79	2.8	79	83	1	244	29	27	12	30	1.93
474804--474922	51	2.4	51	85	5	170	30	29	13	26	1.94
474903--474977	28	2.7	29	83	6	93	25	33	17	24	1.96
474961--475080	51	2.4	51	89	0	186	25	26	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474777--475108	157	2.1	158	81	3	384	26	28	15	29	1.96
475064--475240	79	2.2	78	85	2	237	27	26	14	32	1.94
478135--478210	28	2.8	26	86	9	91	22	27	22	27	1.99
478193--478301	54	2.0	54	85	7	150	25	23	18	32	1.97
478294--478447	79	1.9	79	86	0	218	27	24	14	33	1.94
478301--478475	79	2.2	79	82	4	201	27	26	13	33	1.93
479497--479653	61	2.5	62	83	8	196	34	11	31	22	1.90
479654--479933	27	10.1	27	79	6	256	33	12	30	24	1.92
479681--479905	114	2.0	115	88	0	335	34	12	29	24	1.91
479629--479969	141	2.4	142	84	2	445	34	12	30	23	1.91
479903--480102	34	6.0	34	78	14	195	38	11	30	20	1.87
479935--480092	65	2.5	63	81	6	192	37	12	29	20	1.89
481426--481458	6	5.8	6	96	3	52	0	0	9	90	0.44
482164--482319	80	2.0	80	97	0	294	33	19	21	25	1.97
482940--482964	13	1.9	13	100	0	50	32	16	16	36	1.90
489913--489994	15	4.9	16	80	15	87	82	14	2	0	0.76
489910--489995	33	2.6	32	83	10	111	82	13	3	0	0.79
490232--490285	21	2.6	20	82	11	56	81	9	9	0	0.88
490233--490285	14	3.7	14	80	10	54	81	9	9	0	0.89
490335--490365	15	2.1	15	94	5	55	87	6	6	0	0.68
490325--490366	14	3.1	14	81	18	54	83	9	7	0	0.81
491364--491409	23	2.0	23	91	0	74	30	32	19	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491389--491848	67	6.8	66	83	7	422	20	32	12	33	1.90
491389--491848	34	13.6	34	81	8	503	20	32	12	33	1.90
491861--492284	32	13.0	33	89	5	659	29	35	17	17	1.93
491860--492291	194	2.2	195	90	6	666	29	35	17	17	1.93
492279--493306	92	11.1	92	92	3	1564	25	25	17	31	1.97
492330--493306	141	7.0	140	85	8	1270	25	24	17	31	1.97
493164--493231	22	3.1	22	62	26	54	26	25	17	30	1.97
493207--493344	52	2.6	52	84	3	168	26	23	14	34	1.94
493693--493726	10	3.4	10	95	0	59	35	38	0	26	1.57
494157--494241	19	4.7	19	77	18	101	34	11	15	38	1.84
494198--494222	13	1.9	13	100	0	50	36	16	16	32	1.90
494179--494243	32	2.0	32	100	0	130	33	12	15	38	1.85
494284--494308	13	1.9	13	100	0	50	32	16	16	36	1.90
494317--494441	52	2.4	52	95	0	223	35	17	18	28	1.94
504869--504936	18	3.8	18	73	19	54	55	2	1	39	1.24
504915--504966	15	3.3	15	83	5	50	57	1	0	40	1.10
504913--504968	16	3.5	16	78	14	53	57	1	0	41	1.09
505126--505156	16	1.9	16	93	0	53	29	3	9	58	1.46
505502--505552	17	3.1	17	85	5	68	66	0	0	33	0.92
505606--505694	7	13.0	7	76	12	53	52	1	0	46	1.07
505605--505658	21	2.6	21	83	13	67	42	1	0	55	1.10
505603--505659	14	4.1	15	78	15	61	45	1	0	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505639--505695	28	2.0	28	86	10	80	59	0	0	40	0.97
505639--505711	31	2.4	30	82	13	80	58	0	0	41	0.98
506070--506125	24	2.4	23	88	5	78	44	0	0	55	0.99
506080--506125	22	2.1	22	88	8	67	43	0	0	56	0.99
506568--506607	21	1.9	21	84	0	53	40	2	0	57	1.12
506630--506656	3	9.0	3	100	0	54	66	0	0	33	0.92
507017--507079	27	2.3	26	76	15	65	49	1	0	49	1.10
507858--507911	28	2.0	26	86	13	74	53	1	1	42	1.22
508335--508371	2	18.5	2	94	0	65	0	48	2	48	1.15
509071--509303	63	3.7	63	88	2	315	24	36	15	24	1.94
509189--509320	63	2.1	63	85	2	176	24	36	15	24	1.93
511713--511747	16	2.1	17	89	5	54	62	2	0	34	1.10
511779--511833	21	2.8	21	83	8	62	40	0	3	56	1.17
512080--512162	10	8.2	10	70	17	64	50	0	1	48	1.08
512148--512193	22	2.1	21	84	4	56	30	2	4	63	1.26
513092--513230	8	17.1	8	68	19	58	42	0	0	57	0.98
513090--513175	15	5.9	14	67	19	52	44	0	0	55	0.99
513131--513215	33	2.8	31	74	13	88	44	0	0	55	0.99
513146--513210	24	2.5	26	78	16	64	46	0	0	53	1.00
513195--513235	13	3.3	13	80	13	50	31	0	0	68	0.90
513610--513656	17	2.6	18	81	15	53	55	2	0	42	1.12
513888--513954	26	2.5	28	75	20	72	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513897--513945	5	10.6	5	75	16	52	36	0	0	63	0.95
513908--513969	18	3.3	18	72	14	63	40	0	0	59	0.97
513890--513937	20	2.5	19	79	3	51	35	0	0	64	0.94
513892--513947	13	4.2	13	76	15	53	33	0	0	66	0.92
514140--514200	13	4.5	13	73	20	54	36	0	0	63	0.94
514137--514200	26	2.4	27	76	12	69	37	0	0	62	0.95
514606--514701	28	3.7	26	78	11	92	45	1	1	52	1.14
514609--514731	20	6.6	18	69	17	65	44	0	0	53	1.11
514663--514731	20	3.6	19	75	14	70	43	0	0	56	0.99
515182--515212	15	2.0	16	93	6	55	48	0	0	51	1.00
515178--515233	21	2.6	21	75	11	60	53	0	0	46	1.00
515178--515236	20	2.8	20	75	17	57	50	0	0	49	1.00
515222--515254	15	2.3	15	90	10	52	48	0	0	51	1.00
520463--520574	16	7.0	16	79	4	127	9	17	33	39	1.83
521628--521763	16	8.5	16	74	4	114	16	16	28	37	1.91
521634--521761	48	2.7	48	80	7	134	16	17	28	37	1.91
530765--530802	20	1.9	20	100	0	76	21	15	26	36	1.93
534164--534347	52	3.6	51	82	4	199	46	11	11	30	1.75
535007--535041	17	1.9	18	88	11	54	48	2	2	45	1.32
535361--535506	73	2.0	75	89	5	226	43	4	6	45	1.47
535641--535671	2	15.5	2	100	0	62	0	48	0	51	1.00
536103--536151	25	2.0	25	87	0	71	61	2	0	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536463--536515	19	2.7	20	91	2	81	24	16	18	39	1.91
536581--536611	13	2.4	13	94	0	53	35	16	12	35	1.87
536565--536631	33	2.0	32	86	11	91	37	14	16	31	1.89
537109--537153	22	2.0	22	100	0	90	42	0	26	31	1.56
542386--542478	19	4.7	19	77	16	75	36	17	17	29	1.92
542705--542738	17	1.9	18	88	5	52	32	23	5	38	1.79
544730--544769	22	1.9	19	85	14	53	50	0	20	30	1.49
544896--544937	13	3.2	13	100	0	84	40	16	14	28	1.88
551137--551176	21	2.1	19	86	13	55	30	20	15	35	1.93
552722--552749	13	2.2	13	100	0	56	28	14	14	42	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12