genome.fa.s164.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold164
Parameters: 2 7 7 80 10 50 1000
Length:  2248410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  13  of  15  ( 1726 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1906291--1906444	51	3.0	51	80	7	179	37	11	20	30	1.88
1906378--1906611	79	3.0	78	81	5	283	35	13	22	29	1.92
1906197--1906523	181	1.8	181	82	5	428	34	11	23	30	1.89
1909562--1910217	61	10.8	61	88	1	897	30	18	25	26	1.98
1911185--1911224	17	2.6	16	85	14	57	0	20	2	77	0.88
1911215--1911252	12	3.5	11	86	10	51	0	5	10	84	0.77
1913416--1913563	20	7.8	19	79	15	148	27	16	13	42	1.85
1913456--1913520	33	2.0	33	93	0	112	26	16	15	41	1.88
1913436--1913540	53	2.0	52	90	7	167	25	17	15	41	1.88
1913415--1913560	73	2.0	73	85	7	199	27	16	13	42	1.86
1915720--1915768	19	2.6	19	96	0	89	28	12	20	38	1.89
1916035--1916089	20	2.8	20	88	5	76	40	14	14	30	1.86
1916161--1916186	13	2.0	13	100	0	52	38	15	15	30	1.88
1916142--1916206	33	2.0	33	87	6	96	41	16	13	27	1.87
1922365--1922390	13	2.0	13	100	0	52	30	15	15	38	1.88
1922511--1922556	21	2.2	20	81	11	58	32	19	4	43	1.71
1924827--1924881	20	2.8	20	86	5	67	38	14	16	30	1.89
1924953--1924978	13	2.0	13	100	0	52	38	15	15	30	1.88
1925826--1925951	52	2.4	52	91	0	207	35	19	17	27	1.94
1929317--1929495	51	3.5	50	83	3	200	28	26	11	34	1.91
1929432--1929776	79	4.4	78	81	6	376	28	26	12	32	1.93
1929432--1929766	155	2.1	152	81	7	393	28	26	12	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1935941--1936928	61	17.1	56	75	14	648	26	25	19	28	1.99
1935941--1936560	110	5.4	110	80	10	635	26	25	20	27	1.99
1935947--1936561	227	2.7	224	85	5	799	26	25	20	27	1.99
1935913--1936573	55	11.4	60	80	14	497	26	25	20	27	1.99
1936898--1937055	45	3.8	41	77	15	146	19	25	15	39	1.90
1936924--1937089	43	3.8	42	78	13	149	19	25	13	42	1.87
1936896--1937055	87	1.9	83	84	11	216	19	25	15	40	1.90
1938250--1938426	51	3.5	51	84	2	214	27	28	11	32	1.92
1938362--1938692	79	4.2	79	87	4	449	27	26	14	32	1.95
1940710--1940774	21	3.6	19	73	26	70	44	15	12	27	1.82
1940728--1940753	13	2.0	13	100	0	52	38	15	15	30	1.88
1940710--1940774	34	2.0	33	93	6	114	44	15	12	27	1.82
1942974--1943023	21	2.3	21	80	10	57	56	4	18	22	1.58
1946969--1947010	21	2.0	21	100	0	84	14	33	4	47	1.65
1947075--1947120	21	2.2	20	81	11	58	32	19	4	43	1.71
1948827--1948861	17	2.1	17	100	0	70	31	5	34	28	1.81
1949110--1949381	140	1.9	140	97	1	519	36	7	16	40	1.77
1949567--1949621	20	2.7	21	85	2	76	34	14	20	30	1.92
1949651--1949715	21	3.6	19	73	26	70	44	15	12	27	1.82
1949669--1949694	13	2.0	13	100	0	52	38	15	15	30	1.88
1949651--1949715	34	2.0	33	93	6	114	44	15	12	27	1.82
1953716--1953836	52	2.3	52	94	0	215	28	17	18	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1953716--1953856	52	2.7	52	85	4	187	29	17	19	34	1.94
1953845--1953869	13	1.9	13	100	0	50	36	16	16	32	1.90
1953933--1953957	13	1.9	13	100	0	50	32	16	16	36	1.90
1953911--1953977	33	2.0	33	88	0	98	40	13	11	34	1.81
1954756--1954882	67	1.9	68	85	4	177	39	12	24	23	1.89
1954903--1955822	49	19.3	49	85	7	1227	31	17	25	26	1.97
1954886--1955826	141	6.6	141	90	3	1444	31	17	25	26	1.97
1955833--1955953	33	3.7	33	91	4	192	19	18	33	28	1.95
1955939--1956001	33	1.9	33	83	0	81	34	15	26	22	1.94
1955919--1956555	61	10.2	62	78	13	451	29	14	34	21	1.93
1956437--1956649	31	6.7	31	77	10	191	26	15	35	22	1.94
1955919--1956655	34	23.5	31	74	15	372	29	14	34	21	1.93
1964848--1964968	52	2.3	52	94	0	215	28	17	18	35	1.93
1964848--1964988	52	2.7	52	85	4	187	29	17	19	34	1.94
1964977--1965001	13	1.9	13	100	0	50	36	16	16	32	1.90
1965065--1965089	13	1.9	13	100	0	50	32	16	16	36	1.90
1965043--1965109	33	2.0	33	88	0	98	40	13	11	34	1.81
1965510--1965604	32	3.0	32	79	10	113	28	12	25	33	1.92
1976248--1976583	168	2.0	168	92	1	557	29	14	21	35	1.93
1977278--1977331	20	2.7	20	85	0	63	33	16	12	37	1.87
1977358--1977395	20	1.9	20	94	0	67	28	18	13	39	1.88
1978621--1978653	17	2.0	17	94	5	59	60	0	15	24	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1978963--1979058	16	5.9	16	73	8	70	17	15	25	41	1.89
1979920--1979994	16	4.6	16	72	8	53	20	14	22	42	1.88
1979904--1979994	32	2.8	32	77	8	94	19	14	21	43	1.87
1982440--1982480	3	13.7	3	100	0	82	31	0	0	68	0.90
1985991--1986080	41	2.2	40	80	9	103	57	2	0	40	1.11
1987941--1988000	23	2.5	25	73	18	63	48	1	0	50	1.11
1988507--1988557	16	3.2	16	86	8	70	54	0	1	43	1.11
1988528--1988567	16	2.5	16	88	8	55	62	0	2	35	1.09
1989375--1989399	13	1.9	13	100	0	50	40	36	24	0	1.55
1992531--1992557	2	13.5	2	100	0	54	51	0	0	48	1.00
1995701--1995755	19	2.8	19	81	18	69	40	10	16	32	1.83
1995740--1995766	13	2.1	13	100	0	54	40	14	14	29	1.86
1995724--1995785	32	1.9	33	86	3	90	43	14	12	29	1.83
1996941--1996968	13	2.2	13	100	0	56	28	14	17	39	1.89
2001962--2001986	13	1.9	13	100	0	50	36	16	16	32	1.90
2001942--2002008	33	2.0	33	88	0	98	32	11	14	40	1.83
2002049--2002073	13	1.9	13	100	0	50	32	16	16	36	1.90
2002082--2002210	52	2.5	52	96	0	231	34	18	17	29	1.94
2007618--2007644	10	2.7	10	100	0	54	92	7	0	0	0.38
2008905--2009261	33	11.4	31	79	10	334	22	29	14	32	1.94
2008898--2009261	62	5.8	62	80	10	377	22	30	14	32	1.93
2008905--2009260	95	3.8	97	83	9	368	23	29	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2009095--2009280	95	1.9	97	85	5	261	24	28	14	32	1.94
2009254--2009699	67	6.9	64	80	7	383	20	30	13	36	1.90
2009254--2009699	34	13.8	33	75	10	393	20	30	13	36	1.90
2009314--2009428	27	4.0	27	76	17	97	21	33	13	32	1.92
2009696--2010083	91	4.3	90	87	2	477	25	24	18	31	1.98
2009696--2010420	49	15.6	49	71	14	407	25	25	18	31	1.98
2009706--2010297	140	4.3	141	72	16	424	25	25	18	30	1.98
2009696--2010083	87	4.3	90	88	2	493	25	24	18	31	1.98
2009930--2010134	39	5.0	39	73	10	176	26	26	20	25	1.99
2009930--2010183	126	2.0	127	88	0	375	25	26	21	25	1.99
2010100--2010379	101	2.8	98	80	5	292	24	27	17	31	1.97
2010106--2010428	150	2.2	148	82	5	375	23	26	17	31	1.97
2011257--2011345	20	4.8	20	73	18	84	38	12	10	39	1.77
2011261--2011327	33	2.0	33	91	0	107	37	13	8	40	1.76
2011257--2011378	53	2.3	53	85	2	165	35	13	11	40	1.80
2016043--2016410	198	1.9	198	98	0	718	38	1	27	32	1.65
2021028--2021058	12	2.6	12	94	0	53	29	25	0	45	1.54
2025856--2025914	20	3.0	20	82	7	75	42	11	10	35	1.76
2026743--2026795	20	2.7	20	78	0	61	41	15	15	28	1.87
2029655--2029685	3	10.3	3	100	0	62	67	0	0	32	0.91
2029770--2029846	14	5.4	14	74	18	70	50	0	0	49	1.00
2029774--2029842	23	3.1	23	69	14	63	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2030648--2030684	3	12.3	3	100	0	74	67	0	0	32	0.91
2030792--2030834	20	2.2	20	87	8	61	39	2	0	58	1.11
2031895--2031928	16	2.1	16	89	10	52	64	2	0	32	1.08
2034713--2034771	22	2.5	25	76	15	63	40	1	0	57	1.09
2034748--2034876	14	9.6	14	70	24	68	38	0	0	61	0.96
2034704--2034877	30	6.4	28	68	25	117	39	0	0	60	1.01
2034741--2034882	16	7.9	18	72	24	106	38	0	0	61	0.96
2034759--2034889	38	3.6	38	74	24	136	36	0	0	63	0.95
2034777--2034887	24	4.7	23	71	18	70	36	0	0	63	0.95
2034741--2034879	71	1.9	72	84	12	189	38	0	0	61	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15