genome.fa.s164.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold164
Parameters: 2 7 7 80 10 50 1000
Length:  2248410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  8  of  15  ( 1726 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1150302--1150347	20	2.3	20	88	0	74	36	4	21	36	1.74
1154702--1154779	33	2.4	33	80	4	95	35	15	14	34	1.87
1154810--1154886	20	3.9	20	93	3	129	33	15	14	36	1.88
1154810--1154886	39	2.0	40	92	2	129	33	15	14	36	1.88
1154855--1154916	33	1.9	32	87	9	90	41	16	12	29	1.85
1155440--1155495	22	2.5	22	88	0	76	21	35	3	39	1.71
1161950--1161990	20	2.0	20	90	0	64	39	14	9	36	1.79
1161948--1162016	33	2.1	33	86	5	95	39	17	10	33	1.83
1161970--1162000	13	2.4	13	94	0	53	41	12	9	35	1.76
1162045--1162117	20	3.7	19	85	3	83	38	15	16	30	1.89
1167623--1167661	20	2.1	18	86	13	53	43	17	10	28	1.82
1168126--1168156	15	2.0	16	93	6	55	38	22	0	38	1.54
1169889--1169927	21	2.0	21	90	10	64	43	0	23	33	1.54
1174106--1174234	52	2.5	52	96	0	231	28	19	17	34	1.95
1174276--1174404	19	7.7	19	70	28	114	35	19	11	33	1.88
1174271--1174403	32	4.1	32	96	0	239	35	19	11	33	1.87
1174295--1174383	13	5.9	13	70	27	61	34	17	12	34	1.88
1176585--1176668	19	4.7	19	81	18	108	33	11	17	36	1.87
1176625--1176649	13	1.9	13	100	0	50	36	16	16	32	1.90
1176606--1176670	32	2.0	32	96	0	121	33	12	16	36	1.87
1176711--1176735	13	1.9	13	100	0	50	32	16	16	36	1.90
1183660--1183709	19	2.5	20	90	3	75	38	18	14	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183676--1183726	19	2.6	19	87	9	68	41	15	15	27	1.88
1184018--1184068	20	2.5	20	90	0	75	41	13	9	35	1.78
1185309--1185348	20	2.0	20	90	0	62	35	2	10	52	1.48
1185265--1185593	116	2.8	114	83	5	376	29	8	13	48	1.72
1185265--1185594	58	5.7	57	76	6	281	29	8	13	48	1.72
1185260--1185575	174	1.8	173	82	6	415	29	8	13	48	1.73
1185265--1185649	116	3.3	113	79	8	366	30	9	12	48	1.72
1185313--1185645	174	1.9	174	81	6	397	30	9	12	48	1.72
1185223--1185657	116	3.8	116	77	8	264	30	9	12	47	1.74
1186917--1186970	19	2.8	20	77	2	65	42	12	12	31	1.81
1189443--1189479	13	2.8	13	95	0	65	40	16	10	32	1.83
1195809--1195876	19	3.9	19	78	21	85	35	11	14	38	1.83
1195830--1195854	13	1.9	13	100	0	50	36	16	16	32	1.90
1195811--1195873	32	2.0	32	96	0	117	34	12	15	36	1.86
1195916--1195941	13	2.0	13	100	0	52	30	15	15	38	1.88
1195896--1195962	33	2.0	33	88	0	98	25	14	16	43	1.86
1198368--1198443	27	2.8	28	90	6	111	23	32	21	22	1.98
1198426--1198648	52	4.3	50	80	11	225	30	26	11	31	1.91
1198426--1198648	105	2.1	103	84	4	279	30	26	11	31	1.91
1200298--1200362	19	3.8	18	75	24	77	32	12	16	38	1.86
1200319--1200376	13	4.0	13	74	23	53	34	15	15	34	1.89
1200300--1200375	32	2.4	32	95	0	134	32	14	17	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1200415--1200439	13	1.9	13	100	0	50	32	16	16	36	1.90
1200428--1200576	52	2.9	51	85	7	194	34	17	17	30	1.93
1204972--1205016	18	2.6	18	82	10	58	26	11	0	62	1.29
1206134--1206198	17	3.9	16	72	23	53	64	6	1	27	1.26
1206118--1206193	12	6.6	12	69	13	52	63	5	1	30	1.25
1206174--1206228	20	2.9	17	75	19	56	67	0	0	32	0.91
1206852--1206898	20	2.3	20	81	0	58	59	0	2	38	1.09
1206941--1207050	50	2.3	49	83	7	136	41	0	0	58	0.98
1207044--1207082	19	2.1	19	85	0	51	56	0	0	43	0.99
1206941--1207068	46	2.7	47	78	10	134	43	0	0	56	0.99
1206942--1207089	47	3.1	46	76	6	118	45	0	0	54	1.00
1207408--1207457	21	2.4	21	76	3	57	58	2	6	34	1.34
1208173--1208208	18	1.9	19	88	5	56	52	0	0	47	1.00
1208173--1208223	27	1.9	26	88	11	77	52	0	0	47	1.00
1208453--1208482	16	1.9	16	93	6	53	56	0	0	43	0.99
1209370--1209408	7	5.3	7	82	11	51	56	0	2	41	1.13
1210419--1210465	24	2.0	24	83	8	60	38	2	6	53	1.39
1211240--1211293	25	2.2	24	84	15	67	59	0	1	38	1.08
1211240--1211302	25	2.6	24	81	18	62	60	0	1	38	1.07
1213347--1213399	15	3.5	15	80	14	56	39	0	0	60	0.97
1213350--1213438	44	2.0	43	81	14	103	41	0	0	58	0.98
1213396--1213432	10	3.8	10	80	20	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1213671--1213699	3	10.0	3	92	7	51	0	31	0	68	0.89
1216527--1216588	29	2.1	30	84	3	81	43	3	16	37	1.64
1216527--1216596	30	2.3	30	83	9	90	41	4	17	37	1.69
1217165--1217213	22	2.2	22	86	13	66	34	0	0	65	0.93
1217665--1217702	2	19.0	2	100	0	76	50	0	0	50	1.00
1219101--1219146	22	2.0	23	84	12	60	36	4	8	50	1.53
1220119--1220170	20	2.6	20	84	0	68	42	13	15	28	1.85
1220204--1220266	33	1.9	33	90	3	101	42	20	12	23	1.86
1221684--1221760	28	2.8	28	85	0	91	22	19	35	23	1.96
1221606--1221839	107	2.2	106	83	6	278	29	15	29	26	1.96
1221713--1221993	79	3.6	79	90	4	392	31	14	27	26	1.95
1221522--1221918	186	2.1	185	86	2	555	31	14	27	26	1.95
1221528--1222259	266	2.8	266	91	1	1150	31	14	27	27	1.94
1221871--1222101	108	2.1	107	83	7	281	30	15	27	26	1.96
1221871--1222101	107	2.2	106	83	7	279	30	15	27	26	1.96
1221792--1222180	187	2.1	185	87	4	552	31	14	26	26	1.95
1221978--1222271	79	3.7	79	85	4	362	32	13	26	27	1.93
1224674--1224699	13	2.0	13	100	0	52	38	15	15	30	1.88
1224689--1224769	21	3.9	21	98	0	153	29	19	9	40	1.84
1224794--1224843	19	2.6	19	96	0	91	38	18	12	32	1.87
1230789--1230814	8	3.2	8	100	0	52	15	0	23	61	1.33
1231017--1231055	13	3.0	13	92	0	69	35	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1231488--1231529	20	2.0	21	86	4	59	19	42	28	9	1.82
1232907--1232951	22	2.0	22	87	8	65	33	0	31	35	1.58
1233521--1233570	20	2.5	20	86	0	73	42	14	14	30	1.84
1234895--1235095	51	3.9	51	80	6	210	30	11	27	30	1.91
1234895--1235078	102	1.8	102	82	7	239	29	12	28	29	1.93
1235121--1235177	28	2.0	28	89	0	87	33	19	28	19	1.96
1235208--1235309	28	3.6	28	81	7	136	25	19	32	22	1.97
1238212--1238258	15	3.5	14	78	21	55	27	0	4	68	1.08
1238213--1238330	26	4.4	25	76	16	87	38	0	0	60	1.09
1238214--1238254	21	1.9	22	90	5	66	29	0	2	68	1.03
1238276--1238325	18	3.0	17	75	18	52	42	0	0	58	0.98
1238288--1238330	18	2.3	18	88	4	59	41	0	0	58	0.98
1238300--1238362	32	2.0	31	85	14	85	41	0	0	58	0.98
1238303--1238362	17	3.7	15	78	14	57	38	0	0	61	0.96
1238303--1238363	18	3.6	17	78	17	74	37	0	0	62	0.96
1238304--1238377	32	2.3	30	76	17	78	37	0	0	62	0.96
1238654--1238701	18	2.8	17	78	12	53	37	0	0	62	0.95
1238763--1238807	19	2.2	20	85	14	58	62	0	0	37	0.96
1238731--1238827	49	2.0	51	85	6	137	54	2	0	43	1.11
1238749--1238828	26	3.2	26	77	13	96	56	0	0	43	0.99
1238870--1238931	19	3.4	19	78	14	60	32	6	1	59	1.32
1239326--1239371	24	2.0	23	83	12	58	47	8	2	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1241137--1241210	20	3.7	20	81	0	94	32	16	14	36	1.89
1245228--1245257	15	1.9	16	93	6	53	36	10	0	53	1.35
1245346--1245406	30	2.0	30	90	6	97	21	22	1	54	1.54
1245754--1245882	52	2.5	52	96	0	240	34	17	18	28	1.94
1248977--1249025	17	2.9	17	100	0	98	30	12	10	46	1.74
1249218--1249248	16	1.9	16	93	0	53	25	25	22	25	2.00
1250725--1250790	33	2.0	33	90	0	105	45	16	13	24	1.84
1253590--1253796	79	2.6	79	86	1	272	29	16	28	24	1.96
1253748--1253823	27	2.8	26	88	9	100	21	22	34	22	1.97
1253669--1253874	109	1.9	107	83	5	263	28	16	29	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15