genome.fa.s164.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold164
Parameters: 2 7 7 80 10 50 1000
Length:  2248410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  4  of  15  ( 1726 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556148--556172	13	1.9	13	100	0	50	36	16	16	32	1.90
556128--556194	33	2.0	33	88	0	98	32	11	14	40	1.83
556234--556435	52	3.9	52	90	2	316	33	18	16	31	1.93
570291--570390	1	100.0	1	75	0	92	88	10	2	0	0.61
570292--570413	9	13.4	9	78	14	108	84	13	1	0	0.70
570289--570413	6	21.0	6	78	16	93	84	14	1	0	0.71
570291--570396	20	5.1	20	82	13	117	86	11	1	0	0.64
570292--570413	15	7.9	15	79	11	122	84	13	1	0	0.70
570291--570390	26	4.1	25	83	11	127	88	10	2	0	0.61
571782--572092	34	9.4	34	78	18	313	19	33	13	32	1.91
571832--571955	27	4.3	27	77	15	131	20	37	13	28	1.91
571804--572059	61	4.0	61	81	12	300	20	34	13	30	1.92
571922--572092	70	2.4	69	89	5	263	19	33	13	33	1.90
571922--572099	35	5.1	34	82	8	207	18	34	12	34	1.89
572133--572571	52	8.9	50	78	11	451	25	23	16	34	1.95
572280--572464	43	4.1	43	83	11	244	25	24	17	31	1.97
572229--572504	95	2.9	95	95	1	482	25	24	17	32	1.96
573373--573397	13	1.9	13	100	0	50	36	16	16	32	1.90
573353--573419	33	2.0	33	88	0	98	32	11	14	40	1.83
573460--573484	13	1.9	13	100	0	50	32	16	16	36	1.90
573473--573673	52	3.9	52	89	0	312	34	18	15	31	1.93
579921--579978	23	2.7	21	80	15	57	44	0	3	51	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580020--580048	15	1.9	15	100	0	58	58	0	0	41	0.98
580372--580463	25	3.4	25	77	12	76	34	0	5	59	1.20
581609--581660	16	3.2	16	76	15	54	19	3	5	71	1.22
585338--585362	13	1.9	13	100	0	50	36	16	16	32	1.90
585318--585384	33	2.0	33	88	0	98	32	11	14	40	1.83
585425--585449	13	1.9	13	100	0	50	32	16	16	36	1.90
585458--585585	52	2.5	52	94	3	224	33	17	17	30	1.94
596180--596230	20	2.5	21	87	9	70	31	17	9	41	1.82
597256--597305	18	2.8	17	82	14	57	70	2	2	26	1.09
597683--597744	32	1.9	32	90	0	97	45	0	16	38	1.47
597767--597814	15	3.1	15	74	14	53	70	0	10	18	1.15
597767--597815	16	3.1	16	75	16	57	71	0	10	18	1.13
598991--599033	22	2.0	22	90	9	70	37	0	0	62	0.95
599580--599624	2	22.5	2	100	0	90	48	0	0	51	1.00
604822--604888	34	2.0	34	100	0	134	53	2	14	28	1.56
607208--607345	52	2.6	54	74	16	137	34	4	9	51	1.54
607261--607306	24	1.9	24	86	0	65	30	8	10	50	1.68
607256--607360	28	3.9	27	78	9	108	31	3	10	54	1.52
609417--609442	13	2.0	13	100	0	52	30	15	15	38	1.88
610149--610192	21	2.1	21	83	8	54	25	31	4	38	1.76
611824--611870	21	2.3	21	82	10	62	44	4	19	31	1.70
611991--612016	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615904--615948	21	2.1	21	84	8	56	22	20	4	53	1.63
618164--618189	13	2.0	13	100	0	52	30	15	15	38	1.88
621723--622155	168	2.6	165	80	6	462	32	9	6	51	1.60
631880--632079	95	2.1	92	85	3	265	32	10	14	44	1.78
632865--632977	24	4.7	24	73	0	100	30	14	25	29	1.95
632865--632977	48	2.4	48	83	0	154	30	14	25	29	1.95
636660--636862	14	14.1	14	71	9	59	29	16	18	35	1.93
636667--636737	28	2.4	29	83	4	81	30	15	16	36	1.90
636667--636819	29	5.3	28	70	11	87	30	15	16	37	1.90
636683--636776	15	6.5	14	71	11	73	28	15	17	38	1.90
640532--640593	32	1.9	32	83	9	81	40	6	8	45	1.59
649264--649332	26	2.6	26	72	2	66	59	13	8	18	1.59
649315--649989	3	222.7	3	70	9	188	60	7	6	25	1.47
653189--653283	3	31.7	3	81	0	100	62	7	2	28	1.34
653191--653283	27	3.4	27	86	0	132	62	7	2	27	1.34
653519--653546	13	2.2	13	100	0	56	28	28	0	42	1.56
655977--656023	22	2.0	22	92	8	76	61	4	8	25	1.43
657497--657541	14	2.9	16	78	21	60	51	0	0	48	1.00
658411--658468	25	2.4	23	77	11	62	51	5	0	43	1.24
658420--658466	24	1.9	25	86	4	69	57	4	0	38	1.18
658524--658600	28	2.8	27	71	21	70	42	0	3	53	1.19
661400--661424	7	3.6	7	100	0	50	44	12	0	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670707--670771	34	1.9	34	87	0	94	32	0	24	43	1.55
671338--671411	20	3.6	20	87	3	85	37	9	18	33	1.84
676334--676384	20	2.6	20	90	9	79	33	15	11	39	1.84
676453--676503	24	2.1	24	82	7	59	25	25	9	39	1.86
680137--680170	11	3.1	11	95	0	59	67	0	0	32	0.91
680455--680488	2	17.0	2	93	0	59	47	2	0	50	1.16
681029--681115	27	3.0	29	75	16	74	41	1	0	57	1.06
681071--681119	15	3.5	15	71	23	52	42	0	0	57	0.99
681064--681128	32	2.0	33	81	3	78	44	0	0	55	0.99
681143--681182	10	3.8	10	83	9	53	30	0	0	70	0.88
681028--681177	61	2.6	57	75	15	139	39	1	0	59	1.06
681459--681604	64	2.3	62	77	12	154	48	1	3	46	1.27
681504--681619	16	7.3	16	65	12	60	48	1	1	48	1.22
681917--681991	20	3.8	20	78	0	87	34	13	12	40	1.81
681917--681994	40	2.0	39	87	2	111	34	12	12	39	1.82
685676--685732	28	2.0	28	86	6	80	64	3	1	29	1.20
685927--685951	3	8.3	3	100	0	50	68	0	0	32	0.90
686377--686405	10	2.7	11	89	10	51	75	0	0	24	0.80
686381--686406	10	2.6	10	100	0	52	73	0	0	26	0.84
686430--686470	14	2.9	14	79	20	50	78	14	0	7	0.96
687915--687939	12	2.1	12	100	0	50	84	0	0	16	0.63
692520--692554	15	2.3	15	90	5	52	85	0	11	2	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692510--692554	16	2.8	16	83	10	56	80	2	13	4	0.97
692510--692562	17	3.2	16	79	15	56	75	1	16	5	1.08
693569--693615	23	2.0	23	95	0	85	21	12	12	53	1.72
693775--693813	19	2.1	18	85	9	51	23	15	10	51	1.73
694713--694766	8	6.8	8	80	14	58	81	0	18	0	0.69
694719--694794	10	7.5	10	69	19	50	80	0	15	3	0.86
694771--694812	14	3.4	12	78	15	50	83	0	9	7	0.81
694728--694811	27	3.1	27	79	15	95	80	0	15	3	0.84
694712--694808	42	2.3	42	79	10	110	80	0	16	3	0.84
694712--694811	28	3.9	25	76	16	89	81	0	16	3	0.82
694934--695364	90	4.8	90	77	4	354	29	25	14	30	1.95
695544--695618	36	2.1	36	87	5	107	18	22	10	48	1.79
695658--695865	88	2.4	88	84	4	258	21	25	15	37	1.93
695665--695867	44	4.6	43	74	8	160	22	25	15	36	1.94
695943--697602	42	39.0	42	75	4	897	18	26	18	36	1.94
695957--697642	85	19.8	85	73	5	359	18	26	18	36	1.94
696327--696734	211	1.9	212	82	2	516	18	25	17	37	1.93
695943--697586	469	3.5	464	77	5	1461	18	26	18	36	1.94
695949--697512	341	4.6	340	78	3	1401	18	26	18	36	1.94
695943--697596	127	13.0	128	75	5	1032	18	26	18	36	1.94
697646--697954	42	7.3	42	79	5	273	21	27	19	31	1.97
697646--697976	85	3.9	84	78	3	324	21	27	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
697646--697985	127	2.7	125	79	6	387	21	27	19	31	1.97
699392--699425	12	2.8	12	90	0	50	67	17	8	5	1.37
699669--699735	29	2.4	27	82	7	73	50	8	23	16	1.73
701242--701293	20	2.7	19	80	14	61	30	11	19	38	1.87
701983--702013	16	1.9	16	93	0	53	41	12	9	35	1.76
703364--703407	20	2.1	22	87	8	65	4	27	47	20	1.69
707886--709171	28	44.7	29	85	5	1521	29	31	17	22	1.96
707886--709171	86	14.9	86	85	5	1525	29	31	17	22	1.96
707886--709125	428	2.9	427	89	3	1782	29	31	17	22	1.96
709050--709125	31	2.4	32	82	6	93	32	31	13	22	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15