Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold164
Parameters: 2 7 7 80 10 50 1000
Length:  2248410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1726 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2203508--2203535
8
3.5
8
100
0
56
50
0
0
50
1.00
2207846--2207925
36
2.3
36
79
14
87
57
0
0
42
0.98
2212911--2212952
21
2.0
20
86
13
59
59
0
0
40
0.97
2213445--2213479
3
11.7
3
100
0
70
65
0
0
34
0.93
2214083--2214155
2
37.0
2
97
2
139
50
0
0
49
1.00
2220270--2220344
20
3.8
19
77
7
78
42
12
12
33
1.79
2220267--2220344
40
2.0
39
87
2
111
42
12
11
33
1.79
2220951--2222161
28
42.5
28
84
7
1416
22
18
31
28
1.97
2220951--2222164
199
6.1
196
85
6
1410
22
18
31
28
1.97
2223400--2223457
1
58.0
1
78
0
62
1
0
8
89
0.55
2223389--2223458
9
8.0
9
76
20
69
1
1
11
85
0.72
2223390--2223431
19
2.2
19
91
0
66
0
2
11
85
0.68
2223378--2223448
33
2.2
33
87
5
99
1
2
11
84
0.79
2223389--2223455
14
4.7
14
83
9
73
1
1
10
86
0.70
2223372--2223454
23
3.5
23
80
8
87
2
3
9
84
0.84
2227315--2227540
32
7.0
32
98
0
416
34
16
14
34
1.89
2243448--2243477
15
2.0
15
93
0
51
90
10
0
0
0.47
2243582--2243615
1
34.0
1
87
0
50
0
0
94
5
0.32
2243655--2243698
18
2.5
17
82
17
54
9
0
9
81
0.87
2243756--2243806
21
2.4
22
78
12
54
7
1
19
70
1.21
2243845--2243909
7
9.8
6
74
21
51
1
1
21
75
0.97
2243847--2243882
9
3.5
11
78
21
51
0
0
22
77
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2243835--2243915
14
5.6
14
72
16
58
1
2
20
75
0.99
2243843--2243915
15
4.8
14
70
17
56
1
1
20
76
0.93
2244032--2244120
20
4.7
18
75
17
74
39
56
4
0
1.20
2244060--2244131
17
4.2
16
74
20
58
37
59
2
0
1.12
2244047--2244120
10
7.7
10
70
19
59
40
56
2
0
1.13
2244129--2244175
17
2.8
16
79
20
51
19
78
2
0
0.85
2244276--2244349
21
3.6
20
74
18
62
27
68
4
0
1.07
2244333--2244417
31
2.8
31
77
12
86
29
68
2
0
1.02
2244373--2244477
25
4.2
24
69
17
70
31
67
0
0
0.97
2244366--2244441
19
3.9
19
73
13
66
27
71
1
0
0.95
2244366--2244461
48
2.0
46
82
7
113
29
69
1
0
0.95
2244636--2244663
14
2.0
14
100
0
56
7
92
0
0
0.37
2244639--2244666
13
2.2
13
100
0
56
7
92
0
0
0.37
2244696--2244743
19
2.6
19
87
9
64
31
66
2
0
1.03
2244745--2244785
15
2.8
16
82
14
52
14
80
4
0
0.87
2244748--2244804
28
2.0
28
83
6
71
17
80
1
0
0.79
2244772--2244826
19
3.0
19
77
17
62
29
70
0
0
0.87
2244749--2244801
22
2.4
22
84
12
65
18
79
1
0
0.83
2244790--2244824
17
2.1
17
89
5
54
31
68
0
0
0.90
2244778--2244828
16
2.8
19
75
25
56
31
68
0
0
0.90
2246230--2246271
5
8.4
5
80
19
52
83
0
16
0
0.65
2246207--2246256
9
5.4
9
86
13
66
88
4
6
2
0.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2247240--2247961
61
12.0
61
85
6
856
25
26
19
28
1.99
2247240--2247895
180
3.7
178
86
5
875
26
26
19
28
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!