genome.fa.s164.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold164
Parameters: 2 7 7 80 10 50 1000
Length:  2248410

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  6  of  15  ( 1726 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904378--904495	52	2.3	52	85	4	150	33	11	23	31	1.90
905052--905285	117	2.0	117	93	0	396	40	16	14	28	1.88
907235--907260	13	2.0	13	100	0	52	38	15	15	30	1.88
907247--907309	21	3.0	21	100	0	126	28	19	9	42	1.82
907326--907377	13	3.5	13	73	26	50	36	17	13	32	1.89
907334--907419	19	4.7	19	72	20	76	37	16	12	33	1.87
907326--907398	32	2.3	32	97	0	137	35	17	12	34	1.88
913232--913256	13	1.9	13	100	0	50	36	16	16	32	1.90
913301--913352	13	3.5	13	73	26	50	36	17	13	32	1.89
913309--913423	19	6.7	19	75	22	119	39	15	11	33	1.83
913301--913371	32	2.2	32	100	0	142	38	16	12	32	1.87
913309--913423	51	2.3	51	95	0	203	39	15	11	33	1.83
913359--913438	32	2.5	32	87	0	124	41	15	11	32	1.82
914574--915214	44	14.6	44	70	9	355	38	14	24	21	1.92
914577--915229	88	7.4	88	82	0	689	38	14	25	21	1.91
915230--915473	48	5.2	47	77	8	230	41	16	21	20	1.90
915274--915450	91	2.0	90	86	3	248	41	18	20	20	1.91
915702--915868	89	1.9	90	82	3	212	30	16	27	25	1.97
916672--916712	6	7.0	6	84	15	59	2	0	12	85	0.70
916672--916712	18	2.4	17	95	4	73	2	0	12	85	0.70
917254--917284	16	1.9	16	93	0	53	3	12	0	83	0.75
919488--919531	22	2.0	22	95	0	79	29	22	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920741--920777	18	2.1	17	90	5	56	54	5	8	32	1.53
921693--921728	16	2.3	15	90	4	54	22	2	0	75	0.94
922943--922988	11	4.0	11	83	10	65	0	17	0	82	0.67
922943--922988	12	3.9	12	86	13	69	0	17	0	82	0.67
923573--923644	36	2.0	36	91	2	119	26	29	11	33	1.91
924073--924122	22	2.3	22	89	0	73	38	8	18	36	1.80
924499--924539	21	2.0	21	85	9	57	39	12	9	39	1.76
924620--924756	53	2.6	53	92	1	220	37	17	17	27	1.92
924780--924841	10	6.1	10	74	9	54	25	27	6	40	1.80
924788--924877	31	2.9	32	90	5	139	25	27	8	37	1.86
924886--924924	13	3.0	13	92	0	69	30	15	17	35	1.91
925539--925611	20	3.6	20	81	3	101	35	13	19	31	1.91
925557--925632	21	3.7	21	80	3	100	42	11	17	28	1.84
925539--925632	41	2.3	41	98	0	179	39	12	18	29	1.88
925671--925696	13	2.0	13	100	0	52	38	15	15	30	1.88
925653--925715	32	2.0	32	87	6	92	41	14	15	28	1.87
930899--930971	20	3.6	20	81	3	101	35	13	19	31	1.91
930917--930992	21	3.7	21	80	3	100	42	11	17	28	1.84
930899--930992	41	2.3	41	98	0	179	39	12	18	29	1.88
931031--931056	13	2.0	13	100	0	52	38	15	15	30	1.88
931013--931075	32	2.0	32	87	6	92	41	14	15	28	1.87
931364--932300	470	2.0	467	97	1	1750	26	17	18	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935065--935105	21	2.0	21	90	0	64	19	26	0	53	1.45
936821--936845	13	1.9	13	100	0	50	28	16	16	40	1.89
936880--936942	33	1.9	33	90	6	101	36	14	15	33	1.88
943093--943132	13	3.1	13	96	0	71	30	12	15	42	1.83
943259--943298	20	2.0	20	85	14	55	32	22	0	45	1.53
945619--945675	19	2.9	19	81	2	69	35	15	14	35	1.88
946656--946753	36	3.0	34	80	16	109	29	26	12	31	1.92
947962--948450	166	2.9	165	85	5	635	51	8	8	30	1.62
947979--948536	166	3.3	163	80	9	567	53	8	8	30	1.60
949325--949390	20	3.2	20	84	6	60	16	25	1	56	1.49
949341--949397	20	2.8	20	89	0	78	15	26	0	57	1.38
952118--952161	20	2.4	19	82	17	58	18	25	0	56	1.41
953960--953984	13	1.9	13	100	0	50	32	16	16	36	1.90
954238--954306	19	4.0	18	75	22	76	37	11	14	36	1.83
954241--954303	32	2.0	32	93	0	108	36	12	15	34	1.86
954260--954284	13	1.9	13	100	0	50	36	16	16	32	1.90
954354--954392	20	2.0	20	94	0	69	33	15	10	41	1.81
954346--954372	13	2.1	13	100	0	54	29	14	14	40	1.86
955554--955580	13	2.1	13	100	0	54	40	14	14	29	1.86
955537--955600	33	2.0	33	93	3	112	40	20	12	26	1.88
961676--961715	20	2.0	20	85	0	53	40	15	17	27	1.89
961742--961779	13	2.9	13	88	0	58	31	13	18	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963585--963673	44	2.0	44	93	0	151	44	2	24	28	1.65
964288--964312	13	1.9	13	100	0	50	32	16	16	36	1.90
964566--964634	19	4.0	18	75	22	76	37	11	14	36	1.83
964569--964631	32	2.0	32	93	0	108	36	12	15	34	1.86
964588--964612	13	1.9	13	100	0	50	36	16	16	32	1.90
965920--965980	32	1.9	32	90	3	97	42	19	9	27	1.83
972047--972086	20	2.0	20	85	0	53	40	15	17	27	1.89
972113--972176	13	4.9	13	86	0	92	31	12	18	37	1.88
972113--972176	26	2.5	26	100	0	128	31	12	18	37	1.88
973982--974070	44	2.0	44	95	0	160	43	2	24	29	1.66
974685--974709	13	1.9	13	100	0	50	32	16	16	36	1.90
974962--975030	19	4.0	18	75	22	76	37	11	14	36	1.83
974965--975027	32	2.0	32	93	0	108	36	12	15	34	1.86
974984--975008	13	1.9	13	100	0	50	36	16	16	32	1.90
977461--977577	51	2.4	51	85	9	154	29	22	11	35	1.90
977701--977844	50	2.8	52	78	5	141	28	25	10	35	1.89
977745--977844	52	1.9	53	84	10	134	31	23	10	36	1.87
977460--978046	289	2.0	285	83	5	738	27	25	13	33	1.93
979432--979479	24	2.0	24	100	0	96	37	20	16	25	1.93
990079--990139	8	7.8	8	80	15	74	85	11	3	0	0.72
990082--990132	14	3.8	13	89	2	75	88	9	1	0	0.60
990079--990129	22	2.4	22	93	3	86	86	11	1	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990080--990132	1	53.0	1	76	0	52	88	9	1	0	0.58
990083--990132	13	3.8	12	87	10	64	88	10	2	0	0.61
991106--995090	59	70.2	59	83	8	4331	25	28	21	24	1.99
991525--991671	47	3.0	47	78	15	143	30	28	21	19	1.97
991135--995094	509	7.8	502	92	4	4508	25	28	21	24	1.99
992031--992180	47	3.0	47	76	17	158	30	30	20	18	1.97
991106--995090	568	7.0	562	86	6	5092	25	28	21	24	1.99
992540--992633	47	2.0	47	91	4	154	32	28	21	17	1.95
993229--993375	47	3.0	47	78	15	143	30	28	21	19	1.97
993735--993884	47	3.0	47	76	17	158	30	30	20	18	1.97
994244--994337	47	2.0	47	91	4	154	32	28	21	17	1.95
994859--995094	110	2.1	110	89	1	366	29	28	21	21	1.98
995927--995996	19	4.1	18	75	22	78	38	11	14	35	1.82
995950--995974	13	1.9	13	100	0	50	36	16	16	32	1.90
995931--995993	32	2.0	32	93	0	108	36	12	15	34	1.86
996037--996061	13	1.9	13	100	0	50	32	16	16	36	1.90
998407--998504	51	1.9	51	83	8	128	31	19	9	39	1.83
998505--998581	27	2.8	27	88	5	102	23	32	19	24	1.97
998431--998989	288	2.0	285	87	3	800	26	26	13	33	1.94
1000086--1000112	13	2.1	13	100	0	54	40	14	14	29	1.86
1000069--1000132	33	2.0	32	93	3	110	40	17	12	29	1.86
1001055--1001094	19	2.1	19	95	0	71	17	20	15	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002090--1002135	19	2.5	20	79	13	53	36	0	2	60	1.09
1002899--1002924	13	2.0	13	100	0	52	30	15	15	38	1.88
1002963--1003038	21	3.7	21	82	3	109	28	18	11	40	1.86
1002983--1003056	20	3.7	20	81	3	103	31	20	13	35	1.91
1002963--1003056	41	2.3	41	100	0	188	29	19	12	38	1.89
1005507--1005545	13	3.0	13	96	0	69	35	15	17	30	1.91
1005531--1005609	20	3.7	20	75	18	70	45	15	13	25	1.83
1009458--1009502	21	2.1	21	84	8	56	22	20	4	53	1.63
1011695--1011720	13	2.0	13	100	0	52	30	15	15	38	1.88
1011759--1011834	21	3.7	21	82	3	109	28	18	11	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15