genome.fa.s171.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold171
Parameters: 2 7 7 80 10 50 1000
Length:  2364178

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  11  of  13  ( 1521 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1751760--1751956	76	2.5	77	92	3	315	33	14	24	27	1.94
1754274--1754329	20	2.8	19	84	7	76	44	16	14	25	1.84
1754356--1754412	20	2.8	20	94	0	105	43	15	15	24	1.86
1754345--1754374	13	2.3	13	94	0	51	40	10	16	33	1.82
1755100--1755284	42	4.4	44	76	12	160	37	15	26	21	1.92
1755100--1755264	87	1.9	84	81	9	199	40	13	26	20	1.90
1755255--1755441	61	3.1	59	84	8	234	31	19	26	23	1.98
1755481--1755923	55	8.0	55	89	2	600	23	21	27	27	1.99
1755919--1755994	39	1.9	40	91	2	127	36	15	28	18	1.92
1755863--1756268	100	4.1	100	93	1	636	30	18	29	22	1.97
1756119--1756194	39	1.9	40	86	7	111	30	17	32	19	1.95
1757222--1757285	18	3.4	18	80	8	58	1	4	12	81	0.92
1767486--1767550	32	2.0	33	87	3	96	27	13	15	43	1.85
1767617--1767647	13	2.4	13	94	0	53	35	16	12	35	1.87
1773670--1773698	13	2.2	13	100	0	58	27	13	17	41	1.87
1775522--1775557	19	1.9	19	88	5	56	58	0	30	11	1.33
1776146--1776172	13	2.1	13	100	0	54	29	14	14	40	1.86
1776127--1776191	32	2.0	32	87	3	94	24	16	18	40	1.91
1777991--1778077	23	3.9	21	86	13	97	82	12	4	0	0.81
1777991--1778065	21	3.5	20	85	12	89	84	10	5	0	0.78
1778007--1778065	14	4.1	14	80	10	66	84	11	3	0	0.73
1778013--1778077	20	3.2	20	82	18	82	83	15	1	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1778015--1778068	17	3.1	18	84	10	69	83	14	1	0	0.73
1777990--1778059	1	70.0	1	71	0	50	85	8	5	0	0.73
1779514--1779687	29	6.0	29	83	4	208	27	31	17	24	1.97
1779508--1779678	86	2.0	86	88	2	254	28	31	17	22	1.97
1779663--1779737	35	2.2	35	87	2	116	21	33	10	34	1.88
1779663--1779754	35	2.7	35	82	1	105	19	31	13	35	1.90
1779733--1779851	32	3.6	33	88	4	179	26	33	18	21	1.96
1779733--1779860	66	2.0	62	89	6	193	27	34	17	20	1.95
1779899--1780168	43	6.0	43	83	10	351	25	25	18	30	1.98
1779848--1780225	92	4.1	92	94	1	639	25	25	17	31	1.97
1780126--1780343	67	3.8	54	75	12	179	26	23	14	36	1.93
1780126--1780263	52	2.6	52	81	3	159	26	23	15	35	1.94
1781153--1781177	13	1.9	13	100	0	50	36	16	16	32	1.90
1781133--1781198	32	2.0	33	94	2	116	34	12	16	36	1.86
1781185--1781262	33	2.4	33	100	0	156	41	17	12	28	1.87
1781272--1781296	13	1.9	13	100	0	50	32	16	16	36	1.90
1781305--1781435	52	2.5	52	93	0	217	33	18	16	31	1.93
1781818--1781894	21	3.7	21	89	3	111	35	12	16	35	1.88
1781930--1781995	19	3.8	19	77	22	90	31	12	15	40	1.83
1781932--1782010	32	2.5	32	97	0	149	34	12	15	37	1.85
1781950--1782008	13	4.1	13	73	23	55	32	13	15	38	1.86
1782050--1782075	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1782030--1782096	33	2.0	33	88	0	98	25	14	16	43	1.86
1784540--1784615	27	2.8	28	90	6	111	23	32	21	22	1.98
1784490--1784881	107	3.7	104	73	10	308	28	27	14	30	1.95
1784434--1784768	52	6.4	50	70	14	194	30	25	12	31	1.93
1784751--1784827	28	2.8	28	83	0	91	24	32	19	23	1.97
1784429--1784835	212	1.9	212	88	3	613	28	26	13	31	1.94
1784781--1784983	79	2.6	79	81	3	221	25	29	16	29	1.96
1797389--1797420	11	2.8	11	95	4	55	84	6	9	0	0.78
1797388--1797440	12	4.3	12	88	9	63	84	9	5	0	0.76
1797403--1797450	9	5.6	8	80	11	51	85	10	4	0	0.73
1797386--1797440	13	4.4	12	84	11	67	83	10	5	0	0.79
1797401--1797450	17	2.9	18	79	8	59	86	10	4	0	0.71
1797403--1797449	13	3.5	13	91	8	69	85	10	4	0	0.74
1798435--1798960	55	9.3	54	84	6	577	27	28	20	23	1.99
1798698--1798785	29	3.1	28	62	22	67	23	35	20	20	1.96
1799583--1799650	19	3.9	19	78	21	85	35	11	14	38	1.83
1799585--1799647	32	2.0	32	96	0	117	34	12	15	36	1.86
1799604--1799628	13	1.9	13	100	0	50	36	16	16	32	1.90
1802153--1802228	27	2.8	27	87	2	98	23	30	21	25	1.99
1802213--1802381	52	3.3	51	79	8	180	30	25	11	33	1.91
1802364--1802440	28	2.7	30	88	7	108	23	32	19	24	1.97
1802039--1802489	212	2.1	211	86	4	615	28	26	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1802394--1802596	79	2.6	79	80	3	221	25	28	15	30	1.96
1803790--1803992	79	2.6	79	82	3	221	30	16	28	25	1.96
1803944--1804015	28	2.6	28	88	0	99	23	19	34	22	1.96
1804004--1804173	52	3.3	52	77	9	168	32	13	24	29	1.93
1806646--1806672	13	2.1	13	100	0	54	40	14	14	29	1.86
1806625--1806691	33	2.0	33	91	0	107	44	14	14	25	1.84
1807560--1808720	55	21.3	55	87	8	1539	20	20	30	29	1.97
1807634--1808217	28	21.2	28	61	19	135	20	19	31	29	1.97
1809702--1809758	12	4.8	12	77	16	55	0	8	7	84	0.79
1809725--1809760	13	2.6	14	91	4	56	0	11	5	83	0.80
1809687--1809760	36	2.0	38	84	10	100	0	12	6	81	0.88
1864906--1864940	16	2.1	17	94	5	63	5	40	22	31	1.78
1868818--1869019	79	2.6	79	82	3	219	29	16	29	24	1.96
1868974--1869042	28	2.5	28	85	0	84	26	17	36	20	1.94
1869191--1869263	27	2.6	28	85	8	96	24	23	28	23	1.99
1871680--1871705	13	2.0	13	100	0	52	38	15	15	30	1.88
1871659--1871725	33	2.0	33	88	0	98	43	16	14	25	1.86
1871745--1871799	19	2.9	19	97	0	101	40	14	10	34	1.81
1872588--1873012	55	7.7	55	91	3	644	20	20	30	28	1.98
1872909--1872998	26	3.3	26	69	19	85	18	17	34	28	1.94
1875695--1875750	24	2.5	21	84	15	85	19	14	17	48	1.81
1875698--1875745	24	2.0	24	100	0	96	20	12	20	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1888732--1888820	18	5.1	16	79	15	72	84	11	4	0	0.76
1888733--1888820	22	3.9	22	83	15	101	84	11	4	0	0.77
1888735--1888805	30	2.3	29	84	13	90	85	8	5	0	0.72
1888759--1888820	18	3.4	18	88	6	81	83	14	1	0	0.71
1888732--1888805	1	74.0	1	72	0	58	86	8	5	0	0.70
1890257--1890430	29	6.0	29	84	4	217	27	31	16	24	1.97
1890251--1890421	86	2.0	86	89	2	263	28	31	16	22	1.96
1890406--1890480	35	2.2	35	87	2	116	22	33	9	34	1.86
1890373--1890497	35	3.8	35	78	7	111	23	30	13	32	1.93
1890476--1890594	32	3.6	33	87	4	170	26	32	18	21	1.97
1890476--1890603	66	2.0	62	87	6	184	27	33	17	21	1.96
1890596--1891308	49	14.8	49	79	8	745	25	24	17	33	1.96
1890591--1891259	92	7.1	92	87	5	942	24	24	17	33	1.96
1890870--1891313	150	3.0	150	79	7	438	24	23	16	35	1.95
1891263--1891389	67	1.9	68	86	1	184	25	25	11	37	1.90
1892188--1892212	13	1.9	13	100	0	50	36	16	16	32	1.90
1892168--1892233	32	2.0	33	91	2	107	34	13	16	34	1.88
1892274--1892298	13	1.9	13	100	0	50	32	16	16	36	1.90
1892287--1892431	52	2.8	50	83	6	191	34	17	17	30	1.93
1894581--1894651	27	2.6	27	100	0	142	22	45	19	12	1.84
1896090--1896141	19	2.7	20	84	6	70	40	17	13	28	1.87
1898727--1898792	28	2.4	27	90	10	98	28	22	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1898741--1898795	28	2.0	28	100	0	110	30	18	29	21	1.97
1898777--1898892	51	2.3	51	82	4	144	31	11	26	30	1.91
1898831--1899050	79	2.8	79	89	3	313	34	14	23	27	1.94
1898949--1899009	28	2.2	27	76	2	68	36	18	24	21	1.95
1901351--1901438	20	4.8	19	73	24	73	42	13	14	29	1.84
1901371--1901399	13	2.2	13	100	0	58	41	13	13	31	1.84
1901351--1901420	33	2.1	32	87	10	97	41	12	15	30	1.85
1901454--1901508	20	2.8	20	88	0	83	45	16	14	23	1.84
1902032--1902078	19	2.5	19	92	0	76	61	6	0	31	1.21
1904543--1904598	15	3.8	15	76	4	51	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13