genome.fa.s171.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold171
Parameters: 2 7 7 80 10 50 1000
Length:  2364178

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1521 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2022520--2022770	112	2.2	112	81	6	287	31	19	12	36	1.90
2022555--2022801	112	2.2	112	80	7	277	30	20	15	33	1.94
2023736--2023960	90	2.5	90	84	5	287	28	25	18	27	1.98
2024334--2024476	44	3.2	44	73	6	137	21	27	13	37	1.91
2024707--2024812	43	2.5	44	80	10	114	20	28	13	37	1.90
2024645--2025015	42	8.8	42	74	3	170	18	27	17	36	1.93
2025143--2025270	43	3.0	41	70	9	105	21	30	13	35	1.91
2025068--2025530	84	5.5	83	85	4	520	22	29	14	34	1.93
2025068--2025492	169	2.5	168	87	4	597	22	29	14	33	1.93
2025539--2025662	42	3.0	42	70	9	108	20	26	12	41	1.87
2256344--2256369	13	2.0	13	100	0	52	30	15	15	38	1.88
2258861--2258889	13	2.2	13	100	0	58	31	17	13	37	1.89
2258844--2258908	32	2.0	33	88	8	98	27	15	16	40	1.89
2258873--2258929	19	2.9	19	84	2	78	29	15	19	35	1.93
2259540--2259985	225	2.0	224	90	2	698	30	20	15	33	1.93
2265189--2265230	20	2.1	20	86	8	59	21	0	19	59	1.38
2267333--2267370	18	2.1	18	95	0	67	50	10	7	31	1.66
2267921--2267977	19	2.9	19	87	10	80	31	17	17	33	1.93
2267943--2268118	76	2.3	76	93	1	291	31	22	17	28	1.96
2271002--2271044	21	2.0	21	95	0	77	32	11	11	44	1.77
2271725--2271849	62	2.0	62	96	0	232	31	15	30	23	1.95
2280149--2280210	9	7.0	8	76	18	52	83	12	3	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2280150--2280211	28	2.2	28	86	11	83	85	11	3	0	0.71
2280149--2280210	17	3.5	17	82	10	79	83	12	3	0	0.75
2281475--2281896	30	13.3	32	79	10	406	22	28	14	33	1.94
2281478--2281897	62	6.7	63	79	9	403	22	28	15	34	1.94
2281485--2281897	95	4.4	94	84	5	467	22	28	15	33	1.94
2281834--2282672	34	26.8	32	71	17	500	21	29	13	36	1.91
2281554--2281887	158	2.1	157	84	7	408	22	29	16	32	1.95
2281930--2281983	27	2.0	27	88	0	81	24	37	14	24	1.93
2281898--2282077	61	3.0	60	87	2	254	21	28	15	35	1.93
2282053--2282179	61	2.1	62	83	1	157	22	25	12	40	1.89
2282207--2282679	60	7.7	60	70	14	277	21	30	12	35	1.90
2281868--2282672	94	8.6	92	75	11	596	21	29	13	36	1.91
2282777--2283325	49	11.4	49	77	7	428	24	25	17	32	1.97
2282669--2283172	136	3.6	135	81	6	526	26	25	16	31	1.97
2282808--2282979	87	2.0	87	91	0	281	25	24	19	30	1.98
2282856--2282931	39	1.9	39	83	0	98	28	21	19	30	1.97
2289829--2289860	15	2.1	16	94	5	57	84	3	12	0	0.74
2289905--2289944	20	2.0	21	90	5	64	70	5	15	10	1.32
2291028--2291236	97	2.2	97	91	0	337	29	13	28	28	1.95
2294072--2294102	13	2.4	13	94	0	53	35	12	16	35	1.87
2294147--2294202	19	2.9	19	89	2	76	37	17	14	30	1.90
2294187--2294213	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2302346--2302387	18	2.3	18	87	0	57	33	14	21	30	1.93
2302681--2302753	20	3.7	19	87	7	85	38	17	16	27	1.91
2303267--2303291	13	1.9	13	100	0	50	36	16	16	32	1.90
2303280--2303361	19	4.6	19	82	17	113	32	12	18	36	1.88
2303299--2303369	32	2.2	32	97	0	133	32	12	18	36	1.88
2303318--2303342	13	1.9	13	100	0	50	36	16	16	32	1.90
2303392--2303542	52	2.9	52	93	1	257	35	17	17	28	1.93
2308375--2308433	21	2.8	21	81	0	73	32	8	13	45	1.74
2312655--2313142	79	6.1	77	78	10	394	30	24	9	35	1.88
2314263--2314417	48	3.2	48	83	5	188	36	14	14	34	1.86
2315307--2315363	19	2.9	19	81	2	78	33	17	14	35	1.90
2317242--2317267	13	2.0	13	100	0	52	30	15	15	38	1.88
2321006--2321436	167	2.6	165	84	4	555	50	6	11	31	1.64
2321006--2321516	167	3.1	165	81	5	442	50	6	12	30	1.66
2322535--2322780	80	3.0	80	73	11	228	43	13	26	17	1.85
2322961--2323664	44	16.0	44	71	8	337	39	15	24	20	1.91
2322952--2323664	132	5.4	132	79	3	648	39	15	24	20	1.91
2323655--2323819	35	4.7	35	81	0	195	41	9	24	24	1.85
2323997--2324314	92	3.5	92	81	1	332	31	12	25	31	1.92
2327113--2327179	33	2.0	33	91	0	107	29	17	28	23	1.97
2334883--2334936	19	2.8	20	85	2	74	38	16	14	29	1.89
2335258--2335360	44	2.3	44	89	0	152	35	9	21	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2338078--2338406	143	2.4	136	83	9	404	46	9	18	25	1.79
2340862--2341158	156	1.9	156	80	5	341	38	16	17	27	1.91
2344580--2344637	22	2.7	22	94	2	100	46	22	17	13	1.83
2346195--2346407	31	6.9	31	75	4	115	17	22	29	30	1.96
2346197--2346409	62	3.4	62	78	6	216	16	22	30	30	1.96
2346733--2346957	78	2.9	78	81	7	219	40	13	23	22	1.89
2352152--2352176	3	8.3	3	100	0	50	32	36	0	32	1.58
2353834--2353888	19	2.8	19	91	2	83	34	16	18	30	1.93
2353873--2353899	13	2.1	13	100	0	54	40	14	14	29	1.86
2359806--2359832	13	2.1	13	100	0	54	29	14	14	40	1.86
2359816--2359872	19	2.9	19	89	2	87	31	15	17	35	1.92
2359902--2359972	20	3.9	20	70	24	75	32	12	18	36	1.88
2359922--2359980	13	5.0	13	75	23	67	32	15	16	35	1.90
2359901--2360002	33	3.1	33	90	5	154	33	12	17	36	1.88
2362081--2362462	166	2.3	164	80	8	382	31	11	9	47	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!