genome.fa.s171.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold171
Parameters: 2 7 7 80 10 50 1000
Length:  2364178

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1521 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567038--567113	12	6.9	11	75	15	52	9	48	2	39	1.49
567029--567114	24	3.8	24	72	17	85	10	45	2	41	1.51
567016--567093	9	9.0	9	69	8	54	10	43	2	43	1.52
567016--567090	18	3.8	18	71	19	60	10	42	2	44	1.53
575985--576103	42	2.8	42	92	0	193	8	46	2	42	1.47
576018--576093	12	6.9	11	75	15	52	9	48	2	39	1.49
576009--576094	24	3.8	24	72	17	85	10	45	2	41	1.51
576000--576070	18	3.6	18	69	20	52	9	43	2	43	1.52
576769--576810	20	2.1	20	86	0	57	7	11	4	76	1.15
587095--587213	42	2.8	42	92	0	193	8	46	2	42	1.47
587128--587203	12	6.9	11	75	15	52	9	48	2	39	1.49
587119--587204	24	3.8	24	72	17	85	10	45	2	41	1.51
587110--587180	18	3.6	18	69	20	52	9	43	2	43	1.52
597533--597607	12	6.8	11	75	15	50	40	2	48	9	1.50
597523--597641	42	2.8	42	92	0	193	42	2	45	9	1.49
603799--603874	12	6.9	11	75	15	52	39	2	48	9	1.49
603798--603883	24	3.8	24	72	17	85	41	2	45	10	1.51
603819--603896	9	9.0	9	69	8	54	43	2	43	10	1.52
603822--603896	18	3.8	18	71	19	60	44	2	42	10	1.53
603789--603907	42	2.8	42	90	0	184	43	2	45	8	1.47
610173--610244	28	2.6	29	78	10	78	56	8	22	12	1.62
617138--617183	21	2.2	21	84	0	56	26	15	15	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619757--619796	18	2.2	19	95	4	73	62	15	5	17	1.49
625894--626012	42	2.8	42	92	0	193	8	46	2	42	1.47
625927--626002	12	6.9	11	75	15	52	9	48	2	39	1.49
625918--626003	24	3.8	24	72	17	85	10	45	2	41	1.51
625909--625979	18	3.6	18	69	20	52	9	43	2	43	1.52
627825--627849	11	2.3	11	100	0	50	64	28	8	0	1.22
634212--634319	21	5.3	18	66	30	58	10	48	1	39	1.48
634215--634333	42	2.8	42	93	0	202	9	46	1	42	1.46
634248--634323	12	6.9	11	75	15	52	9	48	2	39	1.49
636423--636463	21	2.0	21	85	9	57	58	0	21	19	1.39
642973--643017	23	1.9	24	90	4	74	71	4	20	4	1.21
643767--643842	12	6.9	11	75	20	70	40	0	46	13	1.43
643757--643851	33	2.9	33	88	0	136	45	0	42	12	1.42
643787--643847	9	6.1	9	75	20	59	44	0	42	13	1.43
648167--648246	42	1.9	42	92	0	133	10	46	2	41	1.51
654588--654649	32	1.9	33	86	3	90	27	11	17	43	1.83
655359--655430	36	2.0	36	94	0	126	38	22	4	34	1.73
657222--657247	13	2.0	13	100	0	52	38	15	15	30	1.88
659321--659356	15	2.3	15	90	4	54	11	19	16	52	1.73
661152--661196	21	2.1	21	84	8	56	22	20	4	53	1.63
663417--663442	13	2.0	13	100	0	52	30	15	15	38	1.88
663397--663460	32	2.0	33	87	3	94	28	14	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668963--668987	13	1.9	13	100	0	50	32	16	16	36	1.90
668975--669027	20	2.6	21	82	8	65	37	16	16	28	1.91
669068--669120	20	2.7	21	85	11	76	35	20	13	30	1.91
675252--675288	13	2.8	13	87	0	56	29	16	16	37	1.90
681180--681250	18	3.6	18	69	20	52	9	43	2	43	1.52
681164--681271	42	2.6	42	92	0	180	9	46	2	41	1.50
681198--681268	12	6.5	11	76	15	51	9	47	2	39	1.51
682024--682057	15	2.3	15	89	0	50	5	14	5	73	1.21
682031--682059	15	1.9	15	100	0	58	6	6	6	79	1.06
683852--683895	22	2.0	22	91	4	72	29	0	31	38	1.58
684449--684473	13	1.9	13	100	0	50	32	16	16	36	1.90
684461--684513	20	2.6	21	82	8	65	37	16	16	28	1.91
684554--684606	20	2.7	21	85	11	76	35	20	13	30	1.91
688433--688517	20	4.6	17	82	13	80	36	8	16	38	1.79
689160--689193	18	1.9	18	88	5	52	32	2	11	52	1.53
693585--693628	21	2.0	22	87	12	65	47	2	9	40	1.48
695433--695602	79	2.2	78	92	1	277	33	11	25	30	1.90
698577--698840	132	2.0	134	91	4	437	31	13	24	31	1.94
698854--699294	61	7.3	60	80	10	416	29	17	26	26	1.98
698799--699294	122	4.0	121	79	9	405	29	17	27	26	1.97
698794--699294	183	2.7	182	79	10	504	29	17	27	26	1.97
700259--700296	9	4.2	9	83	10	51	2	10	0	86	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700259--700294	17	2.1	17	94	0	63	2	11	0	86	0.68
700272--700297	10	2.6	10	100	0	52	0	7	0	92	0.39
702378--702403	13	2.0	13	100	0	52	38	15	15	30	1.88
702360--702423	32	2.0	33	87	9	96	39	17	14	29	1.88
703790--703824	18	2.0	17	88	5	52	31	11	11	45	1.76
706176--706201	13	2.0	13	100	0	52	38	15	15	30	1.88
706158--706221	32	2.0	33	87	9	96	39	17	14	29	1.88
708063--708102	21	1.9	21	100	0	80	30	10	20	40	1.85
708271--708332	19	3.2	19	73	13	63	41	14	16	27	1.87
708320--708344	13	1.9	13	100	0	50	36	16	16	32	1.90
708299--708371	32	2.3	32	97	0	137	34	12	17	35	1.88
708301--708363	19	3.7	18	76	24	73	33	12	17	36	1.88
708388--708429	21	2.0	21	100	0	84	42	9	19	28	1.82
708416--708443	13	2.2	13	100	0	56	28	14	17	39	1.89
710798--711189	52	7.5	52	69	13	212	30	25	11	32	1.91
710974--711189	51	4.2	52	79	9	183	29	25	12	32	1.92
710974--711189	53	4.2	51	80	5	227	29	25	12	32	1.92
710815--711304	264	1.9	264	92	0	820	28	27	12	30	1.93
711208--711442	79	3.0	78	78	5	231	26	27	15	30	1.96
723720--723800	1	81.0	1	76	0	72	87	9	2	0	0.63
723720--723800	11	7.4	11	83	4	101	87	9	2	0	0.63
723720--723800	23	3.8	21	82	10	92	87	9	2	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723720--723800	34	2.4	34	87	6	119	87	9	2	0	0.63
723722--723800	10	7.7	10	77	16	81	87	10	2	0	0.64
724950--724987	19	2.0	19	89	0	58	36	21	13	28	1.91
724975--725000	13	2.0	13	100	0	52	38	15	15	30	1.88
724957--725021	32	2.0	32	87	6	94	40	18	13	27	1.89
727231--727282	21	2.4	21	78	9	61	63	3	9	23	1.41
731155--731192	13	2.9	13	96	0	67	31	18	15	34	1.92
732860--732896	19	1.9	19	94	0	65	70	5	18	5	1.27
732860--732895	17	2.0	18	89	10	56	72	5	16	5	1.23
733656--733726	12	6.5	11	76	15	51	39	2	47	9	1.51
733652--733759	42	2.6	42	92	0	180	41	2	46	9	1.50
740402--740427	13	2.0	13	100	0	52	38	15	15	30	1.88
740384--740448	32	2.0	32	87	6	94	40	18	13	27	1.89
740955--741569	55	10.7	60	83	8	664	27	26	20	25	1.99
740955--741569	115	5.4	115	84	5	789	27	26	20	25	1.99
742187--742226	21	1.9	21	100	0	80	30	10	20	40	1.85
742427--742453	14	1.9	14	100	0	54	37	14	18	29	1.91
742492--742533	21	2.0	21	100	0	84	42	9	19	28	1.82
744792--744926	52	2.6	51	82	3	180	29	27	11	31	1.91
744939--745120	79	2.3	79	81	3	206	25	29	14	30	1.95
756463--756710	79	3.1	77	81	6	282	33	13	25	28	1.93
756647--756762	51	2.3	51	84	0	160	31	12	25	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
756696--756931	79	3.0	78	85	4	330	36	11	21	31	1.88
756565--756842	130	2.1	130	81	7	323	34	11	23	30	1.90
756518--756902	209	1.8	209	85	0	536	36	10	22	30	1.88
756696--756981	158	1.8	158	85	0	410	36	10	22	31	1.88
756696--756981	79	3.6	78	82	6	317	36	10	22	31	1.88
756452--756981	288	1.8	288	82	3	681	35	11	23	29	1.90
759722--760555	74	11.4	74	75	9	602	38	13	22	25	1.91
759725--760555	147	5.7	143	78	7	542	38	13	22	25	1.91
767605--767748	20	6.8	20	74	18	105	25	15	15	43	1.86
770183--770215	17	1.9	17	100	0	66	33	12	12	42	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13