genome.fa.s171.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold171
Parameters: 2 7 7 80 10 50 1000
Length:  2364178

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  6  of  13  ( 1521 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964260--964323	32	2.0	33	90	3	103	28	14	15	42	1.86
968663--968695	11	2.8	12	95	4	59	33	9	18	39	1.82
969852--969908	20	2.8	21	83	2	80	29	15	17	36	1.91
973890--973924	12	2.9	12	86	0	52	82	0	14	2	0.77
981601--981729	52	2.5	52	88	0	213	27	17	17	36	1.93
981601--981749	52	2.9	51	84	4	167	29	17	18	34	1.94
981738--981762	13	1.9	13	100	0	50	36	16	16	32	1.90
981749--981828	21	3.8	21	100	0	160	33	10	17	38	1.83
981857--981921	19	3.7	19	71	23	70	40	16	10	32	1.84
981851--981919	32	2.2	32	94	0	120	39	17	10	33	1.83
982527--982774	43	5.7	43	80	6	261	29	19	25	26	1.99
982651--982718	21	3.2	21	65	19	50	29	19	26	25	1.98
982691--982761	21	3.3	21	64	24	58	28	15	25	30	1.96
982663--982771	22	5.0	22	62	24	61	28	19	24	27	1.98
982801--982896	29	3.3	30	78	10	110	15	15	32	36	1.89
982874--983041	68	2.4	70	87	4	232	33	13	32	20	1.91
982874--983019	36	4.2	35	78	5	170	35	14	32	17	1.90
982874--983036	35	4.7	35	77	4	159	33	13	31	20	1.92
983032--983295	28	9.1	28	79	6	251	19	17	31	31	1.95
983038--983306	30	9.2	30	82	5	286	20	17	32	30	1.95
983006--983306	58	5.2	58	80	6	324	21	16	32	29	1.95
984740--984823	1	84.0	1	72	0	60	1	3	9	85	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984737--984825	12	7.3	12	78	13	76	1	3	11	84	0.80
984734--984822	26	3.5	24	79	10	97	1	3	11	84	0.80
984737--984825	34	2.4	36	79	15	94	1	3	11	84	0.80
998682--998810	52	2.5	53	86	5	183	27	17	19	36	1.94
998714--998830	52	2.2	52	86	5	157	29	17	20	32	1.96
998819--998843	13	1.9	13	100	0	50	36	16	16	32	1.90
998888--998939	13	3.5	13	73	26	50	36	17	13	32	1.89
998888--998958	32	2.2	32	92	0	115	36	18	12	32	1.88
1001117--1001157	20	2.1	19	90	4	64	48	7	17	26	1.73
1001097--1001213	59	2.0	59	89	0	180	45	9	17	27	1.79
1002203--1002442	28	8.5	28	79	3	248	26	19	27	27	1.99
1002203--1002416	86	2.5	86	80	8	251	26	19	27	26	1.99
1002222--1002445	114	2.0	114	85	1	306	26	20	26	26	1.99
1006028--1006477	28	16.0	28	81	7	441	25	15	28	29	1.96
1007636--1007681	19	2.4	18	83	16	58	0	2	10	86	0.64
1009196--1009238	22	2.0	22	95	0	77	39	4	30	25	1.76
1009982--1010037	19	2.9	19	83	2	76	32	21	12	33	1.91
1013040--1013261	79	2.8	79	80	4	232	31	14	27	26	1.95
1013217--1013288	28	2.6	28	82	10	85	25	18	33	23	1.97
1013159--1013552	107	3.7	106	73	11	331	32	13	26	27	1.93
1013166--1013655	211	2.3	211	88	1	698	32	12	26	28	1.93
1013429--1013503	27	2.7	27	87	2	96	24	18	32	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013276--1013669	52	7.6	51	73	12	309	32	11	26	29	1.91
1016078--1016129	21	2.6	21	87	6	72	34	15	11	38	1.83
1018098--1018505	96	4.2	95	82	6	344	38	12	22	26	1.89
1018175--1018505	96	3.4	96	86	4	472	39	11	20	27	1.88
1018175--1018505	95	3.5	94	88	2	475	39	11	20	27	1.88
1020965--1021035	20	3.5	20	88	7	90	26	19	14	39	1.90
1022069--1022837	393	2.0	391	90	1	1227	45	15	8	30	1.76
1023982--1024007	13	2.0	13	100	0	52	38	15	15	30	1.88
1026222--1026266	21	2.1	21	84	8	56	53	4	20	22	1.63
1028070--1028100	15	2.1	15	93	0	53	48	16	22	12	1.80
1030179--1030204	13	2.0	13	100	0	52	30	15	15	38	1.88
1032748--1032773	13	2.0	13	100	0	52	38	15	15	30	1.88
1033670--1034376	164	4.3	163	81	5	694	29	10	8	51	1.66
1034843--1034886	17	2.6	16	85	7	52	72	0	25	2	0.96
1034840--1034885	23	2.0	24	82	4	58	71	0	26	2	0.97
1034839--1034897	21	2.9	21	80	12	52	72	0	22	5	1.03
1034868--1034904	12	3.2	12	88	3	58	75	0	13	10	1.04
1035806--1036194	157	2.4	158	85	7	507	33	11	13	41	1.79
1036473--1036561	13	5.8	13	68	31	52	34	15	12	37	1.85
1036450--1036562	33	3.5	33	95	1	192	34	17	11	36	1.86
1036486--1036548	20	3.5	20	72	28	77	33	15	11	39	1.83
1043210--1043235	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043344--1043393	21	2.4	22	83	9	61	32	20	0	48	1.50
1045434--1045468	10	3.5	10	92	0	61	45	17	14	22	1.84
1046601--1046962	154	2.3	154	84	2	458	27	18	16	38	1.92
1046646--1047058	154	2.7	152	81	5	377	26	17	17	38	1.92
1048511--1048980	84	5.6	82	72	7	304	35	14	30	20	1.92
1048514--1048839	83	3.9	82	74	8	275	34	14	29	20	1.93
1048511--1049196	41	16.4	41	66	8	148	35	14	30	19	1.92
1048930--1049197	82	3.2	82	79	4	252	35	14	31	18	1.91
1049433--1049499	33	2.0	33	88	0	98	34	11	13	40	1.81
1049453--1049477	13	1.9	13	100	0	50	36	16	16	32	1.90
1049574--1049694	52	2.3	52	91	0	206	35	19	17	28	1.94
1052799--1052903	43	2.6	41	79	10	108	31	15	32	20	1.94
1053190--1053300	47	2.4	47	80	3	118	43	12	21	22	1.86
1053271--1053445	48	3.7	48	82	3	203	44	16	21	18	1.86
1053271--1053445	96	1.8	96	85	6	248	44	16	21	18	1.86
1054576--1054759	78	2.3	78	76	9	194	35	14	20	28	1.92
1054730--1054843	51	2.2	51	81	6	133	29	14	25	30	1.94
1054827--1054896	28	2.5	28	88	9	99	25	14	34	25	1.94
1054700--1055033	158	2.1	157	80	7	365	32	13	24	29	1.93
1054887--1055002	51	2.3	51	81	3	126	34	11	21	32	1.89
1057997--1058236	41	5.7	41	76	10	191	39	12	26	22	1.89
1058058--1058242	42	4.3	42	79	13	180	44	10	24	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057983--1058264	42	6.8	39	72	14	163	38	13	27	20	1.90
1058240--1058618	61	6.5	55	76	16	316	27	19	26	26	1.99
1058240--1058618	116	3.2	116	84	8	505	27	19	26	26	1.99
1058234--1058598	122	3.0	121	84	9	505	28	19	27	25	1.98
1059339--1059394	14	4.1	13	80	15	51	0	3	10	85	0.71
1059351--1059394	8	5.4	8	82	12	54	0	0	13	86	0.57
1059344--1059394	20	2.4	22	80	6	61	0	1	11	86	0.66
1059351--1059391	17	2.3	18	91	4	66	0	0	14	85	0.60
1072392--1072443	19	2.7	20	84	6	70	40	17	13	28	1.87
1074645--1074694	21	2.3	21	80	10	57	56	4	18	22	1.58
1076494--1076524	15	2.1	15	93	0	53	48	16	22	12	1.80
1078594--1078619	13	2.0	13	100	0	52	30	15	15	38	1.88
1078740--1078785	21	2.2	20	81	11	58	32	19	4	43	1.71
1081169--1081194	13	2.0	13	100	0	52	38	15	15	30	1.88
1081151--1081214	32	2.0	33	87	3	94	40	17	14	28	1.88
1083153--1083179	4	6.8	4	100	0	54	77	0	0	22	0.76
1085242--1085462	79	2.8	79	82	4	250	32	15	24	27	1.96
1085402--1085513	51	2.2	51	83	3	136	30	14	26	28	1.95
1085498--1085568	27	2.6	25	79	14	79	28	21	28	22	1.99
1085518--1085571	28	2.0	27	88	3	81	33	18	25	22	1.97
1085366--1085702	158	2.1	159	80	7	382	32	14	25	27	1.95
1085551--1085666	52	2.3	52	83	8	157	37	11	24	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1088072--1088154	33	2.5	33	86	3	114	42	12	15	30	1.83
1088126--1088174	20	2.4	20	86	3	71	48	10	14	26	1.75
1088526--1088764	89	2.7	89	83	2	293	28	13	26	31	1.94
1088921--1088975	20	2.7	20	80	2	56	45	9	14	30	1.76
1089321--1089560	88	2.7	89	84	4	317	29	13	26	30	1.94
1088052--1090442	789	3.0	800	94	1	4103	32	15	20	31	1.94
1089675--1089762	20	4.8	20	74	18	91	43	12	15	28	1.84
1089677--1089741	33	2.0	33	90	0	103	41	12	16	29	1.85
1090117--1090355	89	2.7	88	83	5	295	29	13	25	31	1.94
1090117--1090355	88	2.7	89	84	3	304	29	13	25	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13