Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold182
Parameters: 2 7 7 80 10 50 1000
Length:  1166161

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1131 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1051789--1051891
41
2.6
40
77
16
108
53
0
0
44
1.13
1052289--1052323
17
2.1
17
88
0
52
34
0
14
51
1.42
1056788--1056835
2
24.0
2
95
0
87
47
0
2
50
1.12
1058629--1058669
2
21.0
2
85
5
57
48
2
0
48
1.14
1064491--1064517
2
13.5
2
100
0
54
48
0
51
0
1.00
1067059--1067083
2
12.5
2
100
0
50
52
0
0
48
1.00
1068101--1068133
2
16.5
2
100
0
66
51
0
0
48
1.00
1068193--1068235
22
2.0
22
100
0
86
37
18
18
25
1.94
1069407--1069439
17
1.9
17
93
0
57
27
0
3
69
1.03
1069519--1069556
18
2.1
18
85
9
51
31
2
5
60
1.33
1069652--1069686
15
2.2
17
90
10
56
54
0
0
45
0.99
1070723--1070761
2
19.5
2
94
0
69
48
2
0
48
1.15
1071235--1071274
3
13.7
3
94
5
73
0
30
0
70
0.88
1075426--1075459
2
17.0
2
100
0
68
50
0
0
50
1.00
1076425--1076451
2
13.5
2
100
0
54
51
48
0
0
1.00
1079159--1079199
20
2.1
19
86
4
55
36
0
2
60
1.10
1085826--1085930
52
1.9
52
81
11
122
35
1
1
60
1.18
1085886--1085936
17
2.8
19
82
11
70
21
1
0
76
0.88
1086019--1086043
2
12.5
2
100
0
50
48
0
0
52
1.00
1087467--1087496
6
5.0
6
91
0
51
30
16
33
20
1.94
1089860--1089907
3
16.0
3
86
0
69
68
0
31
0
0.90
1095427--1095463
2
18.5
2
94
0
65
51
0
45
2
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1096393--1096426
14
2.2
16
90
10
54
41
41
2
14
1.61
1098451--1098495
2
22.5
2
100
0
90
51
0
0
48
1.00
1098581--1098611
2
15.5
2
100
0
62
51
0
0
48
1.00
1103162--1103195
15
2.2
15
89
5
50
64
0
0
35
0.94
1103183--1103225
20
2.2
19
83
4
50
58
0
0
41
0.98
1103604--1103662
29
2.0
29
93
0
100
50
8
5
35
1.55
1110596--1111028
216
2.0
216
95
0
776
30
15
19
33
1.94
1111774--1111806
13
2.5
13
95
0
57
0
9
0
90
0.44
1111774--1111806
16
2.0
16
94
5
57
0
9
0
90
0.44
1112766--1112800
3
11.7
3
87
0
52
28
0
5
65
1.15
1114992--1115174
89
2.1
89
92
2
305
43
8
6
41
1.60
1115081--1115532
242
1.9
246
83
3
610
40
9
7
42
1.65
1119859--1119888
2
15.0
2
100
0
60
50
0
0
50
1.00
1120898--1120933
2
18.0
2
100
0
72
50
0
0
50
1.00
1127485--1127529
15
3.1
15
81
15
58
44
0
0
55
0.99
1127492--1127528
13
2.9
13
88
11
51
43
0
0
56
0.99
1136756--1136800
24
1.9
23
82
13
56
31
4
17
46
1.68
1147182--1147208
2
13.5
2
100
0
54
51
48
0
0
1.00
1150716--1150767
22
2.3
23
90
3
88
36
9
17
36
1.82
1155439--1155528
44
2.0
44
100
0
180
33
8
20
37
1.83
1155509--1155558
22
2.2
23
92
3
84
32
10
20
38
1.85
1158370--1158432
32
1.9
33
83
3
83
17
23
17
41
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1159759--1159835
8
10.2
8
70
19
51
15
0
36
48
1.46
1159759--1159857
15
6.7
15
79
10
80
17
0
35
47
1.48
1159853--1160694
7
121.3
7
86
5
870
3
5
52
38
1.40
1160218--1166090
7
785.7
7
75
17
3654
4
12
42
39
1.64
1162931--1162980
25
2.0
24
88
11
75
6
16
40
38
1.73
1163012--1166099
30
104.7
28
71
21
887
4
13
41
39
1.67
1163906--1166099
22
100.3
21
72
19
440
5
13
41
40
1.66

Tables:   1   2   3   4   5   6   7   8   9   10

The End!