genome.fa.s182.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold182
Parameters: 2 7 7 80 10 50 1000
Length:  1166161

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  7  of  10  ( 1131 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616542--616583	7	5.7	7	83	10	57	4	14	0	80	0.86
616532--616583	22	2.2	24	86	6	72	7	13	0	78	0.94
617521--617591	27	2.6	27	86	0	97	29	2	22	45	1.67
625358--625383	2	13.0	2	100	0	52	50	0	0	50	1.00
625766--625812	23	2.1	22	84	11	60	53	0	0	46	1.00
628662--628700	20	2.0	20	85	10	53	51	0	0	48	1.00
632631--632659	2	14.5	2	100	0	58	51	0	0	48	1.00
632673--632724	25	2.1	25	88	0	77	67	3	0	28	1.08
632887--632922	17	2.1	17	89	0	54	33	11	11	44	1.75
632936--633000	15	4.4	14	73	21	53	61	0	1	36	1.05
632968--633008	18	2.4	16	88	8	55	68	2	0	29	1.03
633209--633258	24	2.1	24	85	10	68	38	0	0	62	0.96
633871--633904	18	1.9	18	88	5	52	73	2	5	17	1.16
637131--637184	26	2.0	27	85	7	74	46	1	3	48	1.30
638810--638843	14	2.4	14	85	5	50	73	8	5	11	1.24
640697--640734	3	12.7	3	100	0	76	0	34	0	65	0.93
647973--648010	18	2.2	17	86	9	51	44	0	0	55	0.99
648177--648242	6	11.7	6	73	13	52	60	1	0	37	1.06
648176--648250	11	6.9	11	73	16	50	62	1	0	36	1.04
655280--655320	18	2.2	18	86	8	55	36	4	0	58	1.20
655810--655901	32	2.7	34	75	11	89	52	3	4	40	1.38
656607--656646	3	13.0	3	84	5	53	32	0	5	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665611--665635	13	1.9	13	100	0	50	24	4	0	72	1.02
666273--666297	3	8.3	3	100	0	50	36	0	0	64	0.94
671545--671577	16	2.1	16	88	11	50	39	0	3	57	1.14
671868--671926	30	2.0	30	83	6	75	62	3	0	33	1.12
677047--677133	31	2.8	31	78	15	99	55	0	0	44	0.99
677046--677090	15	2.9	15	83	3	54	57	0	0	42	0.98
677093--677159	27	2.6	25	77	13	73	50	0	0	49	1.00
679343--679422	33	2.5	32	74	9	83	42	0	0	57	0.98
679348--679410	23	2.8	23	77	17	69	41	0	0	58	0.98
680475--680519	24	1.9	23	90	4	72	26	0	6	66	1.16
680527--680610	28	3.0	28	73	14	84	41	0	0	58	0.98
680810--680834	7	3.6	7	100	0	50	56	0	0	44	0.99
680892--680930	20	2.0	20	90	5	62	46	0	2	51	1.14
684061--684161	44	2.3	44	80	16	111	47	0	0	52	1.00
684323--684353	2	15.5	2	93	0	53	51	3	0	45	1.17
684747--684771	12	2.1	12	100	0	50	24	8	36	32	1.84
685197--685228	3	10.7	3	100	0	64	31	0	0	68	0.90
687270--687753	147	3.3	147	95	0	842	36	8	10	44	1.68
687964--687999	2	18.5	2	88	5	56	47	0	0	52	1.00
688193--688231	2	20.5	2	89	10	64	46	0	0	53	1.00
688195--688231	13	2.8	13	100	0	74	45	0	0	54	1.00
689078--689115	19	2.0	20	84	5	51	42	7	0	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689161--689220	22	2.9	21	75	18	54	45	0	0	55	0.99
689213--689243	16	1.9	16	93	0	53	41	0	0	58	0.98
689938--689967	3	10.0	3	100	0	60	66	0	0	33	0.92
690411--690488	32	2.3	34	82	6	88	43	0	3	52	1.19
691512--691542	3	10.3	3	100	0	62	67	0	0	32	0.91
691741--691811	31	2.3	30	79	16	74	42	2	2	52	1.31
694420--694463	22	2.0	22	90	0	70	38	31	9	20	1.84
700094--700150	13	4.0	14	75	20	64	31	0	0	68	0.90
700130--700186	10	5.3	10	76	15	60	29	1	1	66	1.12
700536--700565	15	1.9	16	93	6	53	23	0	3	73	0.98
700536--700584	20	2.4	21	82	3	55	24	2	4	69	1.17
701082--701124	23	1.9	22	90	4	68	16	4	13	65	1.43
701211--701321	57	1.9	57	83	3	141	33	9	6	50	1.61
701216--701336	57	2.1	59	81	3	138	37	9	4	48	1.57
701565--701636	26	2.8	27	72	16	71	44	0	0	55	0.99
701540--701634	26	3.5	26	72	20	70	44	1	1	53	1.14
702798--702871	27	2.8	27	81	2	87	24	0	32	43	1.55
706100--706175	23	3.5	20	70	19	64	44	0	0	55	0.99
706732--706787	21	2.5	21	85	11	67	66	0	0	33	0.92
706735--706789	22	2.4	22	82	17	67	65	0	0	34	0.93
707347--707407	21	2.8	20	81	13	68	59	0	1	39	1.08
707353--707407	22	2.5	21	85	8	74	63	0	1	34	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707346--707408	22	2.9	21	75	15	65	58	0	1	39	1.07
708784--708813	2	15.0	2	92	0	51	0	46	0	53	1.00
708813--708919	6	17.8	6	84	0	115	43	5	4	45	1.48
708813--708919	8	13.4	8	81	0	115	43	5	4	45	1.48
708817--708917	14	6.9	14	79	8	103	43	5	4	45	1.50
708813--708903	20	4.6	20	84	0	101	43	5	4	46	1.46
709006--709047	2	21.0	2	85	0	57	42	7	0	50	1.30
709006--709047	14	3.0	14	89	0	66	42	7	0	50	1.30
708878--709135	128	2.0	128	95	0	462	32	14	7	46	1.72
715906--715953	23	2.1	23	100	0	96	52	8	14	25	1.69
716578--716630	26	2.0	26	96	0	97	26	15	20	37	1.92
717943--718001	18	3.3	18	69	19	52	66	0	0	33	0.92
717945--718048	39	2.7	39	82	11	110	64	0	0	35	0.94
717969--718054	28	3.1	28	78	5	84	65	0	0	34	0.93
718015--718094	8	10.9	8	72	21	52	56	0	0	43	0.99
717984--718096	40	2.8	41	81	15	105	59	0	0	40	0.97
718298--718379	12	7.1	12	73	21	68	62	0	1	36	1.03
718329--718417	6	13.8	6	70	25	58	59	0	0	40	0.97
718300--718425	11	11.5	11	72	19	77	60	0	0	38	1.03
718302--718442	40	3.5	40	75	12	112	58	0	1	39	1.12
718325--718462	59	2.3	59	79	15	140	56	0	2	40	1.16
718807--719317	173	3.0	171	95	1	898	21	11	19	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721859--721893	18	2.0	18	88	5	54	45	0	0	54	0.99
721894--721949	30	1.9	30	85	7	80	30	3	3	62	1.29
721955--721988	17	2.0	17	88	0	50	58	0	0	41	0.98
722055--722101	6	7.3	6	81	13	58	57	0	0	42	0.98
722053--722112	26	2.3	25	83	11	75	56	0	3	40	1.16
722460--722505	19	2.4	19	81	0	56	8	17	4	69	1.31
722523--722568	22	2.1	21	84	4	56	73	0	23	2	0.94
722523--722575	22	2.4	22	81	6	54	73	0	24	1	0.93
722610--722684	38	1.9	39	81	7	91	41	0	0	58	0.98
723744--723804	31	2.0	31	84	12	81	50	0	0	49	1.00
723782--723844	28	2.1	30	82	8	76	49	0	0	50	1.00
727566--727617	27	2.0	26	85	11	70	11	7	1	78	1.02
732210--732264	18	3.2	17	78	12	60	56	0	0	43	0.99
732257--732298	11	3.7	11	79	17	50	66	0	0	33	0.92
732257--732298	23	1.9	22	85	9	59	66	0	0	33	0.92
732271--732311	18	2.2	18	86	8	55	58	2	0	39	1.11
732412--732452	11	3.7	12	81	15	52	68	2	0	29	1.03
732406--732435	15	1.9	15	93	6	51	66	0	0	33	0.92
732405--732453	22	2.2	22	82	7	64	69	2	0	28	1.00
732412--732535	9	13.0	10	66	16	50	61	1	1	35	1.16
732465--732571	27	4.0	27	77	10	103	57	0	0	41	1.05
732462--732568	18	5.9	19	69	8	62	58	0	0	40	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732530--732573	20	2.2	20	91	0	70	59	0	0	40	0.98
732585--732618	14	2.3	15	90	5	52	70	0	0	29	0.87
732583--732620	18	2.1	18	85	9	51	68	0	0	31	0.90
732752--732814	20	3.1	20	76	13	65	60	0	0	39	0.97
733043--733092	16	2.9	18	75	22	54	36	0	0	64	0.94
733052--733114	23	3.0	23	71	23	57	30	1	0	68	0.99
733061--733095	18	1.9	18	94	0	61	34	0	0	65	0.93
733043--733113	28	2.3	31	86	11	94	33	1	0	64	1.02
733831--733869	3	13.0	3	94	0	69	30	0	0	69	0.89
733836--733899	9	6.8	9	82	7	56	37	0	1	60	1.06

Tables:   1   2   3   4   5   6   7   8   9   10