genome.fa.s182.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold182
Parameters: 2 7 7 80 10 50 1000
Length:  1166161

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1131 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272331--272365	18	1.9	18	88	0	52	34	0	2	62	1.10
272588--272636	23	2.1	24	85	11	66	57	2	0	40	1.10
272640--272698	23	2.5	23	81	8	66	49	0	1	49	1.11
273689--273749	24	2.6	24	77	12	63	42	3	4	49	1.40
273808--273847	12	3.2	12	82	3	53	42	0	0	57	0.98
273946--274003	28	2.1	28	83	6	73	53	1	1	43	1.21
275697--275731	2	17.5	2	100	0	70	51	0	0	48	1.00
276076--276143	11	6.3	11	70	14	52	52	0	1	45	1.09
276217--276406	95	2.0	93	79	8	197	43	3	7	45	1.49
276241--276425	93	2.0	94	83	7	234	41	3	9	45	1.53
276495--276597	21	4.9	20	76	15	77	32	2	1	63	1.20
276501--276601	52	1.9	51	90	7	159	30	2	2	63	1.24
276537--276596	31	2.0	30	90	3	93	35	1	1	61	1.16
276551--276596	15	3.0	15	78	15	58	36	0	0	63	0.95
276530--276607	21	3.8	21	81	6	79	32	1	3	62	1.21
276908--276959	18	2.9	18	82	5	61	48	1	3	46	1.31
277536--277640	16	6.8	16	68	19	53	53	0	0	45	1.06
277541--277613	23	3.2	22	72	16	69	49	0	0	50	1.00
288267--288436	25	7.1	23	68	17	71	57	0	0	42	0.99
288289--288357	21	3.0	21	71	21	57	56	0	0	43	0.99
288324--288377	16	3.4	15	79	18	56	50	0	0	50	1.00
288296--288351	20	2.7	21	78	10	53	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288287--288389	32	3.1	35	76	14	92	57	0	0	42	0.98
288337--288372	18	2.1	17	94	5	63	47	0	0	52	1.00
288289--288383	18	4.8	20	68	20	58	56	0	0	43	0.99
288359--288421	30	2.2	31	81	16	82	60	0	0	39	0.97
288361--288437	29	2.8	29	79	11	74	61	0	0	38	0.96
288311--288457	30	4.6	32	69	19	76	57	0	0	42	1.04
289173--289209	18	2.2	18	90	9	60	59	0	0	40	0.97
289575--289659	42	2.0	41	82	10	102	48	3	1	47	1.26
290128--290201	32	2.3	32	83	4	87	41	2	1	54	1.23
290192--290249	12	4.8	12	80	6	64	29	0	0	70	0.87
290203--290259	17	3.3	18	81	18	68	31	0	0	68	0.90
290192--290259	24	2.9	22	82	8	73	30	0	0	69	0.89
290203--290243	16	2.5	16	88	11	57	26	0	0	73	0.84
290819--290854	12	3.1	12	84	8	56	47	2	0	50	1.15
290974--291041	24	2.9	24	75	12	70	63	1	0	35	1.04
290988--291026	13	2.9	14	88	7	55	66	0	0	33	0.92
290989--291058	32	2.2	32	82	5	79	60	1	0	38	1.06
291003--291076	32	2.3	33	85	4	105	56	1	0	41	1.07
291182--291219	2	19.0	2	100	0	76	0	50	0	50	1.00
293816--293897	34	2.4	34	77	2	92	29	1	31	37	1.65
299825--299864	21	1.9	21	90	10	64	60	0	0	40	0.97
302756--302945	63	3.0	63	81	4	213	27	20	34	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302756--303010	21	12.1	21	73	7	187	28	19	33	18	1.95
304702--304732	13	2.4	13	94	0	53	16	0	3	80	0.83
304717--304756	21	2.0	21	90	5	64	30	2	0	67	1.04
304803--304884	13	6.0	14	70	14	55	63	1	0	35	1.02
304828--304868	15	2.7	16	81	11	50	53	2	0	43	1.13
304814--304874	22	2.9	21	72	15	54	60	1	0	37	1.07
306979--307047	33	2.1	33	100	0	138	24	14	20	40	1.90
307910--307943	16	2.2	16	89	5	52	26	0	8	64	1.22
307919--307997	16	4.9	16	77	11	81	35	0	3	60	1.15
307923--307997	32	2.3	32	84	8	91	34	0	4	61	1.15
308213--308254	16	2.6	16	82	14	59	33	4	7	54	1.49
309285--309324	21	1.9	21	90	10	64	32	0	0	67	0.91
309585--309674	11	8.5	11	71	21	68	57	0	0	42	0.98
309565--309683	28	4.0	30	74	17	104	59	0	0	39	1.03
309580--309675	22	4.5	22	77	16	89	57	0	0	42	0.98
313145--313175	13	2.4	13	94	0	53	51	0	6	41	1.27
313236--313284	19	2.9	17	85	11	57	57	4	2	36	1.30
313598--313641	15	3.1	15	81	18	58	52	2	0	45	1.13
315016--315058	2	21.5	2	100	0	86	51	0	0	48	1.00
315199--315236	2	19.0	2	100	0	76	50	0	0	50	1.00
315716--315753	18	2.1	19	90	5	60	52	0	0	47	1.00
315726--315798	31	2.3	32	79	9	87	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315999--316067	11	6.1	11	75	12	59	60	0	0	39	0.97
316883--316936	27	2.0	27	82	7	65	40	0	1	57	1.09
319152--319190	13	3.2	13	85	7	55	30	0	10	58	1.31
322021--322066	15	3.1	15	73	17	51	36	0	0	63	0.95
322011--322066	29	1.9	29	85	0	76	42	0	0	57	0.99
322145--322178	16	2.1	16	89	10	52	67	0	0	32	0.91
322216--322245	15	1.9	16	93	6	53	43	0	0	56	0.99
322922--322952	8	3.9	8	100	0	62	61	0	0	38	0.96
324690--324778	44	2.0	44	97	2	171	34	26	5	32	1.80
326200--326242	19	2.3	19	79	0	50	39	0	0	60	0.97
331065--331116	14	3.6	14	78	14	61	61	1	1	34	1.18
331334--331377	22	2.0	22	82	13	54	61	0	0	38	0.96
331920--331974	25	2.1	26	83	10	67	41	1	1	54	1.21
332806--332845	20	1.9	20	90	10	62	40	0	0	60	0.97
333087--333122	14	2.8	13	88	12	56	25	0	2	72	0.98
333566--333612	21	2.4	20	79	10	53	53	4	2	40	1.32
334299--334402	18	5.9	19	75	18	93	49	0	0	50	1.07
334320--334408	32	2.8	30	81	13	97	48	0	1	50	1.08
334299--334408	33	3.2	33	81	12	100	50	0	0	49	1.07
334369--334451	43	2.0	41	83	9	105	51	0	0	48	1.00
334666--334766	35	2.8	38	71	14	97	50	0	0	48	1.07
335166--335197	2	16.0	2	93	0	55	46	0	3	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335943--335991	13	3.8	13	84	12	50	65	0	0	34	0.93
335943--335991	26	1.9	25	83	4	62	65	0	0	34	0.93
336025--336072	9	5.8	9	80	9	50	39	0	2	58	1.10
336020--336079	23	2.5	24	78	13	61	36	1	1	60	1.17
336158--336211	15	3.4	17	71	21	53	62	0	0	37	0.95
336141--336211	31	2.3	31	82	4	81	63	0	0	36	0.95
336231--336308	42	1.9	40	87	10	113	53	0	0	46	1.00
337159--337213	22	2.4	23	82	11	69	67	5	7	20	1.35
339909--339948	19	2.0	20	86	13	57	42	0	0	57	0.98
340568--340614	22	2.2	22	78	14	55	36	0	2	61	1.08
342983--343063	18	4.4	18	71	20	62	38	4	0	56	1.21
343659--343697	3	13.0	3	100	0	78	66	0	0	33	0.92
343903--343950	19	2.5	19	93	0	78	31	22	6	39	1.79
352828--352863	19	1.9	18	88	5	54	58	0	0	41	0.98
359565--359602	16	2.4	16	91	4	60	36	0	13	50	1.42
362132--362177	22	2.1	21	88	11	67	45	0	0	54	0.99
362132--362177	21	2.1	22	88	11	69	45	0	0	54	0.99
364410--364454	21	2.0	23	87	8	67	71	2	4	22	1.15
365962--366015	20	2.7	20	88	11	76	35	18	14	31	1.91
370174--370253	33	2.4	33	91	4	126	36	15	15	33	1.88
370712--370760	15	3.0	17	80	11	50	51	0	0	48	1.00
370735--370783	13	4.1	12	73	26	50	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370736--370780	23	2.0	22	91	4	72	40	0	0	60	0.97
371238--371282	2	23.0	2	90	4	74	51	0	0	48	1.00
371486--371547	32	2.0	32	87	9	92	50	0	0	50	1.00
371530--371621	35	2.7	34	78	11	82	52	2	0	45	1.13
371823--371854	6	5.3	6	92	0	55	34	0	0	65	0.93
371816--371853	18	2.1	18	90	0	58	42	0	0	57	0.98
371821--371869	12	3.9	13	75	15	50	40	0	0	59	0.98
375480--375539	28	2.1	27	82	11	68	50	0	0	50	1.00
376462--376493	2	16.0	2	93	0	55	50	3	0	46	1.17
376908--376960	20	2.7	20	74	11	54	32	11	1	54	1.47

Tables:   1   2   3   4   5   6   7   8   9   10