genome.fa.s182.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold182
Parameters: 2 7 7 80 10 50 1000
Length:  1166161

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  6  of  10  ( 1131 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499050--499088	18	2.2	18	86	9	53	38	0	0	61	0.96
499368--499471	30	3.5	30	80	8	90	41	4	2	50	1.38
499458--499526	23	3.0	22	74	4	57	57	1	1	39	1.16
499474--499558	28	3.0	28	83	10	102	61	1	0	37	1.04
499829--499857	2	14.5	2	100	0	58	51	0	0	48	1.00
499912--499959	11	4.4	11	80	17	55	39	0	0	60	0.97
502606--502673	21	3.0	21	75	14	57	54	0	1	44	1.09
503507--503571	11	5.8	11	75	10	60	61	0	1	36	1.05
503517--503579	12	5.0	13	74	14	60	63	0	1	34	1.04
503504--503583	9	8.7	9	75	18	58	60	0	2	37	1.11
503504--503583	16	5.5	15	73	20	55	60	0	2	37	1.11
504825--504857	2	16.5	2	93	0	57	45	0	3	51	1.16
505731--505774	22	1.9	22	86	9	61	29	0	0	70	0.88
506156--506186	14	2.2	14	94	0	53	16	0	0	83	0.64
506158--506197	20	2.0	20	85	0	53	27	0	0	72	0.85
506832--506868	3	12.3	3	100	0	74	67	0	0	32	0.91
506880--506923	15	3.0	15	83	6	54	50	0	0	50	1.00
506902--506972	38	1.9	36	88	5	106	36	0	1	61	1.05
506908--506975	31	2.3	31	80	12	79	36	0	1	61	1.05
507054--507093	17	2.4	16	87	4	53	45	5	5	45	1.47
507062--507097	16	2.2	17	95	5	65	44	5	8	41	1.58
507751--507804	27	1.9	28	81	7	65	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510081--510134	20	2.7	21	82	5	67	33	0	1	64	1.04
510644--510853	12	17.2	12	67	18	80	57	1	1	39	1.18
510654--510730	21	3.8	21	80	13	97	64	1	1	32	1.09
510651--510730	28	2.7	28	74	14	79	65	1	1	32	1.09
510643--510851	11	19.8	11	68	21	92	56	1	1	39	1.19
510710--510818	32	3.2	33	77	15	105	51	0	0	47	1.07
510731--510820	20	5.0	19	71	26	63	48	1	0	50	1.08
510651--510852	6	33.2	6	66	25	54	57	1	0	39	1.17
512169--512203	18	2.0	18	88	5	54	51	0	5	42	1.25
512331--512380	14	3.9	14	75	20	54	36	2	0	62	1.07
512337--512385	24	2.0	25	88	4	73	40	2	0	57	1.10
512928--512969	3	14.0	3	100	0	84	66	0	33	0	0.92
516787--516852	26	2.5	27	76	16	66	43	0	0	56	0.99
516807--516858	27	2.0	27	88	3	79	48	0	0	51	1.00
525866--526082	108	2.0	107	91	2	355	40	18	11	29	1.87
528399--528444	21	2.3	20	85	7	58	13	6	2	78	1.04
529206--529256	25	2.0	26	88	3	77	45	0	0	54	0.99
543678--543742	25	2.7	23	77	11	67	33	0	1	64	1.03
543959--543994	11	3.3	11	92	7	56	55	0	0	44	0.99
544218--544270	27	2.0	27	88	7	81	60	0	0	39	0.97
546317--546355	2	19.5	2	100	0	78	48	0	0	51	1.00
549876--549949	32	2.3	32	81	11	96	50	1	4	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550422--550482	28	2.2	29	77	19	67	49	1	0	49	1.10
551143--551184	20	2.0	22	90	9	70	40	0	0	59	0.97
551539--551629	8	11.2	8	70	23	57	59	0	2	38	1.10
551546--551597	27	2.0	26	85	11	70	55	0	0	44	0.99
551532--551588	17	3.2	17	77	22	64	56	0	1	42	1.10
551572--551629	31	1.9	30	86	10	82	60	0	3	36	1.14
552443--552508	32	2.1	32	97	0	123	50	15	16	18	1.79
554226--554386	46	3.5	44	72	19	118	40	1	0	57	1.14
554226--554293	23	3.2	20	78	12	64	36	1	1	60	1.15
554229--554348	6	19.5	6	67	24	56	40	0	0	57	1.10
554271--554321	26	1.9	26	92	4	84	41	0	0	58	0.98
554280--554341	16	3.8	16	74	18	56	43	0	0	56	0.99
554649--554690	20	2.2	19	86	4	57	40	0	4	54	1.21
556846--556879	2	17.0	2	100	0	68	0	50	0	50	1.00
560011--560108	46	2.2	47	82	10	118	54	1	0	44	1.07
560617--560694	35	2.2	34	84	13	97	52	0	3	43	1.19
562003--562034	13	2.3	15	89	10	50	65	0	0	34	0.93
562569--562617	23	2.1	22	82	14	55	51	0	6	42	1.27
562621--562678	21	2.9	21	80	10	59	51	0	1	46	1.11
563915--563949	2	18.0	2	94	5	63	48	0	0	51	1.00
565107--565205	46	2.1	46	87	5	137	38	8	10	43	1.68
566323--566424	18	5.2	20	68	20	63	44	0	0	54	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566345--566380	17	2.1	17	90	10	56	41	0	0	58	0.98
566325--566378	11	5.1	11	75	20	53	42	0	0	57	0.98
566373--566422	16	2.8	17	78	18	57	44	0	2	54	1.11
567063--567120	23	2.5	24	80	5	64	50	0	0	50	1.00
567151--567181	15	2.1	15	100	0	62	61	0	0	38	0.96
567668--567727	29	2.0	30	87	6	86	48	1	0	50	1.11
568244--568282	19	2.0	21	90	10	64	46	0	5	48	1.24
568456--568492	3	12.3	3	100	0	74	32	0	0	67	0.91
569924--569978	23	2.3	23	81	9	67	60	0	0	40	0.97
571123--571155	14	2.5	13	95	5	57	75	0	0	24	0.80
571692--571764	36	2.1	35	87	7	103	63	0	1	35	1.04
573246--573298	27	1.9	27	85	11	72	35	0	5	58	1.22
573276--573403	38	3.3	37	78	5	121	36	3	5	53	1.42
573344--573436	22	4.7	21	75	16	67	40	3	1	54	1.23
573365--573407	18	2.5	17	82	14	52	37	4	2	55	1.33
573402--573436	17	2.1	17	94	0	61	45	0	0	54	0.99
573503--573596	39	2.5	37	81	8	100	48	4	2	44	1.34
580027--580064	12	3.1	13	85	11	53	44	0	0	55	0.99
580033--580092	30	2.0	31	87	9	88	46	0	0	53	1.00
580067--580147	36	2.1	36	84	8	99	48	0	0	51	1.00
580077--580147	36	2.0	36	88	5	108	47	0	0	52	1.00
586513--586542	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587106--587139	3	11.3	3	100	0	68	0	35	0	64	0.94
590364--590398	2	17.5	2	100	0	70	51	0	48	0	1.00
592659--593109	227	2.0	226	91	2	726	38	14	11	34	1.84
593694--593720	2	13.5	2	100	0	54	48	0	51	0	1.00
595973--596009	18	2.0	20	89	10	60	64	0	0	35	0.94
596315--596374	30	2.0	30	100	0	120	50	10	6	33	1.62
602000--602034	6	5.8	6	96	0	61	48	14	0	37	1.44
602062--602095	14	2.4	14	85	0	50	44	8	5	41	1.60
602466--602512	12	4.1	12	74	20	55	38	2	2	57	1.23
602626--602696	11	6.6	10	73	19	54	70	1	0	28	0.96
602626--602693	10	6.3	12	76	15	53	70	1	0	27	0.96
602565--602679	60	1.9	60	89	0	176	63	4	3	28	1.30
602885--602946	17	3.9	16	77	12	65	59	0	1	38	1.07
602902--602968	25	2.6	26	81	11	75	58	1	0	40	1.07
603322--603374	20	2.5	22	82	17	67	33	0	1	64	1.05
603369--603410	22	1.9	22	90	9	68	38	0	0	61	0.96
603473--604312	293	2.9	291	88	4	1247	36	7	6	49	1.56
609087--609129	6	6.7	6	80	15	50	37	2	0	60	1.10
609106--609167	28	2.2	30	83	13	87	45	1	3	50	1.27
609230--609275	14	3.4	14	77	14	51	69	0	0	30	0.89
609234--609268	16	2.1	18	89	10	56	68	0	0	31	0.90
609225--609290	27	2.2	29	79	15	73	65	1	0	33	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609270--609318	24	2.0	24	88	8	71	59	2	0	38	1.09
609274--609343	22	3.1	24	71	19	53	55	1	0	42	1.08
609282--609346	14	4.9	14	77	19	68	53	0	0	46	1.00
609688--609725	20	1.9	20	84	10	51	39	0	0	60	0.97
610753--610778	2	13.0	2	100	0	52	50	0	0	50	1.00
611228--611265	2	19.0	2	94	0	67	47	2	0	50	1.15
614063--614101	20	2.0	20	85	10	53	48	0	2	48	1.15
615153--615191	21	1.9	21	94	5	71	28	2	0	69	1.02
616465--616525	30	2.0	32	84	12	83	63	4	1	29	1.24
616542--616583	15	2.9	14	86	10	57	4	14	0	80	0.86

Tables:   1   2   3   4   5   6   7   8   9   10