genome.fa.s182.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold182
Parameters: 2 7 7 80 10 50 1000
Length:  1166161

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  9  of  10  ( 1131 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881109--881160	24	2.1	25	82	10	63	46	3	1	48	1.31
881421--881487	30	2.2	30	91	0	107	32	7	22	37	1.82
891525--891587	24	2.5	26	80	12	78	42	0	0	57	0.99
891525--891587	25	2.5	24	80	12	74	42	0	0	57	0.99
897867--898331	178	2.6	178	92	2	754	27	14	19	38	1.91
901469--901555	28	2.9	31	77	18	85	41	1	2	55	1.20
902086--902140	21	2.6	21	77	13	60	58	5	5	30	1.44
904445--904478	12	2.8	12	95	0	59	50	0	8	41	1.34
904441--904478	16	2.4	16	95	0	67	50	0	7	42	1.31
910723--911150	226	1.9	221	90	3	678	36	19	11	32	1.87
913509--913573	6	10.8	6	86	0	67	4	35	16	43	1.69
917485--917528	21	2.1	21	100	0	88	31	18	25	25	1.97
917826--917876	26	1.9	27	88	4	77	66	1	0	31	1.03
917827--917888	26	2.4	26	81	7	65	66	1	0	32	1.02
918635--918682	20	2.6	18	78	15	53	60	0	0	39	0.97
918648--918696	19	2.6	19	78	15	57	63	0	0	36	0.95
918698--918743	23	2.0	23	82	0	56	47	6	2	43	1.41
923219--923282	23	2.8	23	80	0	65	50	4	12	32	1.61
930218--930248	10	3.1	10	95	0	53	41	6	0	51	1.27
930862--930898	17	2.1	18	90	5	58	18	0	18	62	1.34
931497--931573	29	2.7	29	85	0	100	20	6	9	63	1.46
931922--931947	13	2.0	13	100	0	52	23	7	0	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
933695--933734	7	5.7	7	81	0	53	30	0	0	70	0.88
933700--933749	18	2.7	19	87	3	66	30	0	0	70	0.88
934089--934132	13	3.1	14	81	18	56	68	0	2	29	1.02
934391--934454	2	32.0	2	90	0	101	48	3	1	46	1.27
934558--934611	25	2.2	24	78	9	56	40	0	3	55	1.17
935120--935146	6	4.5	6	100	0	54	66	0	0	33	0.92
935566--935627	28	2.3	27	88	2	88	67	1	1	29	1.09
935636--935686	24	2.1	24	82	7	59	47	3	0	49	1.20
936721--936808	39	2.3	38	77	11	90	47	1	1	50	1.16
942364--942468	51	2.2	44	82	12	122	33	20	19	27	1.96
942381--942516	51	2.7	51	89	1	202	31	20	19	27	1.97
946925--947036	51	2.2	51	85	1	145	32	21	16	30	1.95
946965--947060	50	1.9	51	82	6	124	33	23	14	28	1.94
948558--948623	21	3.1	21	71	18	64	36	1	0	62	1.05
948557--948657	42	2.3	43	79	11	105	39	0	0	59	1.04
948617--948698	26	3.1	27	76	11	91	54	0	0	45	0.99
948611--948713	30	3.4	30	73	17	79	51	0	0	48	1.00
948771--948802	2	16.5	2	93	6	57	50	0	0	50	1.00
949110--949164	21	2.3	23	79	14	60	58	1	3	36	1.26
949531--949564	14	2.3	15	85	10	52	50	0	0	50	1.00
949602--949671	22	3.3	21	78	9	79	50	0	0	50	1.00
949594--949669	27	2.8	28	74	5	77	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949602--949671	10	6.5	11	74	12	65	50	0	0	50	1.00
949611--949673	16	3.9	15	81	10	72	47	0	0	52	1.00
960330--960402	32	2.3	31	85	2	101	30	10	21	36	1.88
963660--963701	2	21.0	2	100	0	84	50	0	0	50	1.00
964661--964693	4	8.2	4	93	0	57	48	3	0	48	1.17
969215--969243	12	2.3	13	94	5	51	37	0	0	62	0.96
969286--969316	15	2.0	16	93	6	55	48	6	0	45	1.28
974947--975010	2	32.0	2	100	0	128	0	50	0	50	1.00
975010--975036	2	13.5	2	100	0	54	48	0	0	51	1.00
975377--975421	15	2.8	17	71	25	51	55	0	2	42	1.12
975808--975851	9	4.8	9	81	15	54	50	0	0	50	1.00
975808--975852	19	2.4	20	85	10	60	51	0	0	48	1.00
978819--978861	23	1.9	22	86	13	61	58	0	0	41	0.98
979670--979700	15	2.1	15	100	0	62	12	19	0	67	1.22
980570--980597	2	14.0	2	100	0	56	50	0	0	50	1.00
980808--980837	2	15.0	2	100	0	60	50	0	0	50	1.00
983219--983248	2	15.0	2	100	0	60	50	0	0	50	1.00
986108--986141	17	2.0	17	100	0	68	29	41	5	23	1.78
990828--990866	16	2.4	17	87	12	55	58	0	0	41	0.98
990811--990896	26	3.2	27	77	19	83	62	0	0	37	0.95
990814--990885	13	5.5	13	67	16	51	62	0	0	37	0.95
991670--991696	6	4.5	6	100	0	54	0	85	0	14	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
995325--995355	13	2.4	13	94	0	53	54	12	12	19	1.70
996760--996849	23	3.8	24	74	14	73	38	0	3	57	1.15
997048--997099	13	4.0	13	78	7	52	50	3	0	46	1.20
997344--997368	2	12.5	2	100	0	50	52	0	0	48	1.00
997660--997786	48	2.6	48	73	3	112	33	21	2	42	1.66
1000640--1000678	2	19.5	2	89	0	60	48	0	5	46	1.24
1000921--1000950	2	15.0	2	92	0	51	0	53	0	46	1.00
1001728--1001767	12	3.3	12	85	0	62	45	7	5	42	1.54
1004332--1004392	24	2.5	24	77	12	63	63	6	3	26	1.34
1005069--1005109	2	20.5	2	100	0	82	51	0	48	0	1.00
1013365--1013399	2	17.5	2	100	0	70	51	0	48	0	1.00
1015610--1015638	2	14.5	2	100	0	58	48	0	0	51	1.00
1017369--1017397	2	14.5	2	100	0	58	51	0	0	48	1.00
1019746--1019812	24	2.8	22	76	17	62	44	0	0	55	0.99
1019777--1019831	17	3.5	17	72	23	57	43	0	0	56	0.99
1019756--1019831	30	2.6	30	82	17	97	44	0	0	55	0.99
1020507--1020544	15	2.4	16	78	8	51	31	10	0	57	1.32
1020924--1020963	20	2.0	20	85	9	55	50	0	0	50	1.00
1021258--1021295	3	12.7	3	100	0	76	68	0	0	31	0.90
1022439--1022472	6	5.5	6	86	6	50	70	0	0	29	0.87
1026808--1026866	24	2.5	24	81	5	68	50	3	0	45	1.18
1027021--1027058	15	2.5	15	79	12	51	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1027047--1027086	11	3.5	11	86	3	53	60	0	0	40	0.97
1027520--1027608	16	5.2	16	70	15	54	59	0	2	38	1.10
1027517--1027613	18	5.6	18	65	14	51	58	0	2	39	1.10
1028073--1028161	19	4.7	19	72	25	73	64	0	2	33	1.06
1028073--1028164	29	3.2	28	75	17	91	63	0	2	34	1.07
1029251--1029281	2	15.5	2	93	0	53	48	0	3	48	1.17
1030483--1030526	22	2.0	22	86	13	63	43	0	2	54	1.12
1030966--1031019	27	2.0	28	85	3	74	44	0	0	55	0.99
1031088--1031155	30	2.2	31	87	12	95	32	0	0	67	0.91
1031102--1031162	6	9.7	6	76	13	52	36	0	0	63	0.94
1031045--1031155	31	3.7	30	76	20	99	33	0	0	65	0.99
1031088--1031160	33	2.3	32	84	13	98	32	0	0	67	0.91
1031011--1031141	10	12.9	10	67	22	69	35	0	1	63	1.04
1030997--1031169	51	3.3	50	70	17	129	38	0	1	60	1.04
1030984--1031162	27	6.9	27	67	16	92	38	0	1	60	1.04
1031065--1031170	39	2.7	39	73	12	101	34	0	0	64	1.00
1031538--1031588	2	26.0	2	76	4	50	43	1	5	49	1.38
1032091--1032133	14	3.0	14	83	13	52	58	0	0	41	0.98
1036172--1036215	18	2.6	16	76	16	52	45	0	0	54	0.99
1036180--1036241	25	2.3	26	81	10	72	38	0	1	59	1.07
1037086--1037120	3	11.7	3	100	0	70	31	0	0	68	0.90
1037324--1037361	14	2.5	15	87	12	60	44	2	0	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1038948--1038972	3	8.3	3	100	0	50	32	0	0	68	0.90
1042694--1042722	5	5.8	5	100	0	58	79	0	20	0	0.74
1042905--1042957	6	8.8	6	91	0	79	30	18	33	16	1.94
1043200--1043236	17	2.2	17	90	9	58	21	18	29	29	1.97
1044708--1044732	2	12.5	2	100	0	50	52	0	0	48	1.00
1044831--1044865	5	7.0	5	100	0	70	40	20	0	40	1.52
1044900--1044930	2	15.5	2	100	0	62	48	0	0	51	1.00
1046546--1046571	2	13.0	2	100	0	52	50	0	50	0	1.00
1048101--1048130	2	15.0	2	100	0	60	50	0	0	50	1.00
1051428--1051471	22	2.0	22	90	0	70	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10