genome.fa.s182.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold182
Parameters: 2 7 7 80 10 50 1000
Length:  1166161

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1131 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376954--377234	143	2.0	144	89	2	431	32	17	8	41	1.81
379432--379489	25	2.2	27	84	9	75	53	6	3	36	1.45
379424--379489	27	2.5	27	78	9	73	53	6	3	37	1.41
380883--380925	22	1.9	23	85	4	61	58	0	0	41	0.98
380892--380927	17	2.1	17	89	0	54	55	0	0	44	0.99
383273--383316	20	2.2	19	84	8	52	63	0	2	34	1.07
385394--385470	22	3.5	21	77	15	75	44	0	1	54	1.08
386220--386262	15	2.8	16	72	13	54	44	0	0	55	0.99
386362--386419	26	2.3	26	82	11	68	62	0	3	34	1.12
394985--395010	11	2.4	11	100	0	52	42	0	0	57	0.98
394996--395040	19	2.4	20	88	7	60	33	0	0	66	0.92
395002--395040	19	2.1	19	95	0	69	33	0	0	66	0.92
395009--395053	19	2.3	19	84	3	54	35	0	0	64	0.94
396435--396466	2	16.0	2	100	0	64	50	0	0	50	1.00
398683--398734	12	4.3	12	83	9	70	67	1	0	30	1.02
399663--399958	152	2.0	148	90	2	466	26	12	21	39	1.89
400746--400789	2	22.0	2	100	0	88	50	50	0	0	1.00
400988--401038	25	2.0	25	100	0	102	39	13	19	27	1.90
402545--402588	15	3.1	14	81	12	54	65	0	0	34	0.93
404568--404643	33	2.3	34	80	8	86	50	3	3	42	1.39
407147--407261	53	2.3	50	79	15	137	53	0	0	46	1.00
407258--407297	19	2.0	20	85	4	55	55	2	0	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409619--409675	20	2.8	19	81	10	60	61	0	0	38	0.96
409892--409925	3	11.0	3	93	6	59	35	0	0	64	0.94
409975--410023	25	2.0	24	84	11	64	30	0	0	69	0.89
409971--410041	22	3.1	22	77	16	65	33	0	0	66	0.92
409991--410044	23	2.6	19	74	23	54	31	0	0	68	0.90
410000--410066	29	2.4	28	82	7	73	37	0	1	61	1.05
410880--410909	13	2.3	13	100	0	60	70	0	0	30	0.88
411085--411188	29	3.6	28	77	12	102	51	2	4	40	1.38
411183--411236	24	2.2	24	78	12	58	50	1	3	44	1.30
412459--412571	10	11.1	10	69	19	56	41	0	0	56	1.11
412465--412510	15	3.0	15	74	25	51	43	0	0	56	0.99
412419--412511	41	2.2	41	81	7	98	45	1	0	53	1.07
412420--412511	15	6.1	14	66	33	50	44	1	0	54	1.07
412519--412573	19	2.8	19	76	18	60	34	0	1	63	1.05
412518--412563	12	4.0	12	78	16	53	34	0	2	63	1.07
412719--412756	2	19.0	2	100	0	76	0	50	0	50	1.00
413685--413725	19	2.3	18	87	8	57	41	0	0	58	0.98
414545--414592	17	2.9	17	75	24	50	31	0	2	66	1.03
414521--414639	65	1.9	62	82	8	150	33	1	0	63	1.10
414535--414640	28	3.2	32	71	21	85	33	1	0	64	1.11
414521--414655	65	2.1	65	79	10	143	34	2	0	62	1.13
415378--415434	29	1.9	30	86	10	82	40	1	0	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415377--415445	31	2.2	31	80	17	81	46	1	0	52	1.09
415882--415919	2	19.0	2	94	0	67	50	2	0	47	1.15
416041--416087	16	2.8	17	84	12	53	74	0	0	25	0.82
416173--416214	14	3.0	14	83	10	50	33	0	2	64	1.07
419304--419353	23	2.2	23	82	7	57	38	2	0	60	1.09
421278--421320	22	1.9	23	81	13	54	53	0	0	46	1.00
421398--421435	18	2.1	18	90	9	60	47	0	0	52	1.00
421439--421485	24	2.0	24	82	0	58	51	2	0	46	1.13
421444--421504	22	2.6	24	70	17	56	47	1	0	50	1.10
421586--421665	30	2.6	31	84	4	108	46	3	1	48	1.28
424299--424339	22	1.9	21	94	0	64	36	4	2	56	1.34
424478--424525	25	1.9	25	86	0	69	37	6	4	52	1.46
424496--424542	22	2.1	22	84	7	60	40	6	4	48	1.48
428083--428147	22	2.8	25	75	20	77	36	6	0	56	1.24
428314--428408	47	2.0	47	100	0	190	36	12	14	35	1.85
429900--429926	2	13.5	2	100	0	54	48	0	0	51	1.00
432086--432111	3	8.7	3	100	0	52	69	0	30	0	0.89
432315--432367	22	2.4	22	84	12	65	69	0	0	30	0.88
432326--432398	23	3.2	22	78	14	60	65	0	0	34	0.93
432360--432418	22	2.7	22	84	7	68	61	0	0	38	0.96
432327--432458	30	4.5	29	74	17	103	59	0	0	40	0.97
432527--432631	33	3.1	34	76	11	110	41	0	0	57	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432576--432631	23	2.3	24	82	17	71	41	0	0	58	0.98
432621--432677	22	2.6	22	83	2	62	42	3	0	54	1.17
432629--432680	11	4.7	11	80	0	59	40	3	0	55	1.18
432777--432801	12	2.1	12	100	0	50	52	0	0	48	1.00
433028--433106	15	4.9	14	76	23	68	55	0	0	44	0.99
433018--433071	28	1.9	27	85	7	72	53	0	0	46	1.00
433082--433133	11	4.9	11	77	17	56	51	5	0	42	1.25
433325--433366	19	2.2	19	87	12	59	42	0	0	57	0.99
434319--434346	5	5.6	5	100	0	56	17	0	0	82	0.68
434361--434471	55	2.0	55	94	0	195	18	27	16	37	1.92
440960--441029	35	2.1	33	89	7	106	40	25	11	22	1.88
445609--445657	22	2.3	22	86	10	66	59	0	4	36	1.17
445703--445811	55	2.0	55	100	0	218	42	5	11	41	1.63
445793--445817	2	12.5	2	100	0	50	48	0	0	52	1.00
448821--448884	32	2.0	32	96	3	121	21	0	12	65	1.25
448908--448933	13	2.0	13	100	0	52	53	7	7	30	1.57
460495--460528	3	11.3	3	100	0	68	64	0	0	35	0.94
460545--460596	27	1.9	27	88	7	79	46	0	0	53	1.00
460530--460585	20	2.8	21	81	10	64	42	0	0	57	0.99
461963--462060	23	4.2	23	73	12	83	46	0	1	52	1.07
461963--462014	24	2.2	24	86	3	70	42	0	1	55	1.10
462001--462035	17	2.1	16	89	5	52	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462440--462485	14	3.1	14	76	11	56	41	2	0	56	1.11
463055--463131	38	2.0	38	100	0	154	18	15	19	46	1.84
463627--463667	22	1.9	21	90	5	64	31	0	2	65	1.05
463912--463958	24	2.0	24	91	4	78	53	4	6	36	1.46
467873--467906	2	17.0	2	100	0	68	50	0	0	50	1.00
469475--469546	36	2.0	36	88	0	108	34	1	9	54	1.42
471031--471105	26	2.9	25	77	15	64	65	0	0	34	0.93
471020--471079	31	2.0	31	83	9	79	68	0	0	31	0.90
471058--471106	11	4.5	11	80	10	55	65	0	0	34	0.93
471058--471103	21	2.1	22	84	4	58	65	0	0	34	0.93
471423--471454	3	10.7	3	100	0	64	68	0	0	31	0.90
478309--478363	24	2.3	24	96	0	101	20	25	29	25	1.99
478317--478369	24	2.3	23	93	6	90	22	26	30	20	1.98
480050--480113	27	2.3	27	75	5	65	54	0	0	45	0.99
480257--480351	15	6.4	14	66	20	50	44	0	3	52	1.17
480260--480343	30	2.8	29	78	12	82	40	0	3	55	1.17
480296--480351	15	3.7	15	77	15	62	46	0	1	51	1.11
480765--480861	29	3.3	29	80	7	106	36	2	2	59	1.21
481265--481329	34	1.9	33	82	14	80	53	0	0	46	1.00
485739--485764	6	4.3	6	100	0	52	0	34	15	50	1.45
486864--486976	28	4.2	26	71	18	70	38	0	0	61	0.96
486882--486947	24	2.6	27	79	16	77	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486904--486950	19	2.5	19	86	6	60	40	0	0	59	0.97
486925--486977	27	1.9	28	85	11	74	30	0	0	69	0.88
486931--486998	18	3.7	19	81	13	72	30	0	0	69	0.89
489415--489462	18	2.7	20	75	21	52	54	0	0	45	0.99
490745--490800	20	2.7	21	80	17	64	41	1	0	57	1.09
490753--490798	22	2.1	23	88	8	69	39	2	0	58	1.10
492659--492715	20	3.0	21	80	14	70	47	0	0	52	1.00
493525--493569	2	22.5	2	100	0	90	48	0	0	51	1.00
497689--497713	12	2.1	12	100	0	50	32	0	44	24	1.54
498804--498838	2	17.5	2	100	0	70	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10