genome.fa.s182.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold182
Parameters: 2 7 7 80 10 50 1000
Length:  1166161

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1131 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92122--92167	18	2.4	19	79	17	51	52	2	0	45	1.13
92161--92205	16	2.9	16	87	12	67	28	0	0	71	0.87
92161--92212	7	7.1	7	77	16	52	30	0	0	69	0.89
92173--92215	21	2.0	22	86	9	61	30	0	0	69	0.88
92162--92222	26	2.3	26	83	5	79	34	0	0	65	0.93
92475--92594	14	8.4	14	70	15	77	55	0	0	44	1.05
92475--92532	5	12.4	5	78	10	61	56	0	0	43	0.99
92486--92592	27	3.8	27	74	12	90	54	0	0	44	1.06
92485--92592	32	3.6	31	77	14	118	54	0	0	44	1.06
92777--92821	21	2.0	23	87	8	67	37	2	0	60	1.09
92880--92960	35	2.4	34	87	10	112	30	1	0	67	0.98
92888--92966	41	2.0	40	85	7	106	30	1	0	68	0.98
94169--94241	8	9.1	8	72	19	55	35	0	1	63	1.04
94171--94282	12	8.8	12	67	23	52	34	0	0	64	1.00
94142--94232	23	4.1	21	71	13	67	39	1	1	58	1.13
94178--94282	30	3.8	26	77	18	81	34	0	0	64	1.00
94657--94710	22	2.4	23	75	6	58	55	1	0	42	1.10
94695--94776	30	2.8	28	80	12	92	45	1	3	50	1.27
95090--95122	13	2.4	14	90	5	50	57	0	0	42	0.98
101028--101058	2	16.0	2	93	6	55	48	0	0	51	1.00
102626--102661	16	2.2	16	100	0	72	22	13	30	33	1.93
102895--102939	18	2.5	17	79	13	54	53	2	2	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102934--102967	17	2.1	16	88	5	50	47	0	2	50	1.16
103537--103574	18	2.0	19	90	10	60	47	0	7	44	1.32
105509--105569	27	2.3	27	94	0	104	36	4	8	50	1.54
105863--105907	16	2.8	16	83	13	56	48	0	0	51	1.00
107898--107948	26	2.0	25	85	11	68	49	1	0	49	1.12
108997--109231	126	1.9	126	94	0	416	34	14	22	28	1.93
109506--109539	12	2.8	12	90	0	50	70	5	20	2	1.21
115118--115153	3	12.0	3	100	0	72	33	33	0	33	1.58
116902--116927	1	26.0	1	100	0	52	0	100	0	0	0.00
117377--117408	2	16.0	2	100	0	64	50	0	0	50	1.00
118481--118541	25	2.6	24	76	19	65	31	0	6	62	1.21
118954--119016	34	2.0	32	82	17	78	36	3	9	50	1.51
119190--119268	27	2.9	26	77	18	88	37	1	1	59	1.14
119190--119270	29	2.9	29	72	20	73	39	1	1	58	1.14
119191--119295	55	1.9	56	82	9	135	40	0	1	57	1.16
120748--120797	20	2.4	22	80	12	61	52	4	0	44	1.20
122179--122217	13	3.0	13	85	11	53	56	0	2	41	1.13
125214--125240	2	13.5	2	100	0	54	51	0	0	48	1.00
125688--125742	18	3.1	17	80	17	58	36	0	5	58	1.21
126536--126591	27	2.0	28	86	10	80	42	0	0	57	0.99
128278--128325	25	1.9	24	84	16	62	33	18	12	35	1.89
130138--130218	20	4.0	19	81	14	83	64	0	1	34	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130193--130238	8	5.4	8	82	12	56	58	0	0	41	0.98
130139--130310	16	9.7	17	65	24	65	59	0	1	38	1.09
130174--130299	60	2.2	57	81	14	145	58	0	0	39	1.09
130170--130245	26	3.0	26	74	16	79	59	0	0	40	0.98
132821--132895	38	2.0	38	97	0	141	48	14	2	34	1.58
133365--133397	6	5.8	6	92	7	52	45	0	0	54	0.99
133366--133448	22	3.7	22	71	17	73	54	0	0	45	0.99
133765--133799	18	1.9	18	88	0	52	34	0	2	62	1.10
133810--133861	23	2.2	23	77	16	54	55	0	0	44	0.99
134399--134426	13	2.2	13	100	0	56	50	0	0	50	1.00
134766--134799	11	2.9	12	82	8	52	73	0	0	26	0.83
134756--134799	23	1.9	23	90	0	70	70	2	0	27	0.99
134914--134983	36	2.0	34	86	5	95	48	4	1	45	1.30
134964--135022	12	4.8	12	71	19	50	64	1	1	32	1.13
135159--135190	4	8.0	4	100	0	64	0	25	0	75	0.81
135405--135457	22	2.5	20	74	17	52	62	7	1	28	1.33
135464--135542	8	8.3	10	74	22	57	59	1	0	39	1.06
137164--137190	11	2.5	11	100	0	54	70	0	0	29	0.88
137328--137366	19	2.0	21	90	10	64	51	2	0	46	1.14
137371--137410	19	2.2	19	86	13	57	62	0	0	37	0.95
137371--137419	18	2.6	19	81	9	57	57	0	0	42	0.99
140272--140320	12	4.0	12	78	10	55	65	2	0	32	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140383--140447	20	3.2	20	73	4	51	44	1	1	52	1.19
141309--141360	20	2.4	23	81	9	65	59	1	0	38	1.08
141346--141389	23	2.0	23	86	13	65	54	0	0	45	0.99
149050--149100	20	2.7	19	74	17	52	66	0	3	29	1.09
149314--149380	14	4.6	14	70	26	50	62	1	1	34	1.13
149314--149350	15	2.6	15	83	8	51	59	0	2	37	1.12
149368--149419	27	2.0	25	81	7	59	55	0	0	44	0.99
158716--158756	2	20.5	2	100	0	82	51	0	48	0	1.00
159008--159074	33	2.0	33	100	0	134	41	20	8	28	1.83
159084--159118	3	11.7	3	100	0	70	0	0	31	68	0.90
162222--162627	202	2.0	202	98	0	785	34	23	13	28	1.93
163048--163136	44	2.0	44	97	0	169	37	23	11	28	1.89
168325--168378	14	3.7	16	76	18	55	37	0	5	57	1.22
168593--168665	23	3.3	23	80	14	82	38	1	0	60	1.06
168594--168664	22	3.1	22	78	11	74	36	1	0	61	1.05
173556--173593	19	2.0	19	85	10	51	55	0	0	44	0.99
177329--177355	2	13.5	2	100	0	54	51	0	0	48	1.00
177863--177904	22	2.0	22	90	4	68	69	0	2	28	1.01
178745--178794	19	2.7	18	81	9	64	48	12	0	40	1.40
178979--179043	23	2.9	22	77	11	69	56	1	0	41	1.08
178979--179040	6	10.8	6	73	16	51	58	1	0	40	1.08
178986--179040	17	3.2	17	80	10	60	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179180--179219	17	2.3	18	87	8	57	37	0	0	62	0.95
179282--179345	27	2.5	25	80	9	76	48	0	0	51	1.00
179375--179448	28	2.8	26	77	16	71	62	4	0	33	1.14
180949--180978	2	15.0	2	100	0	60	0	0	50	50	1.00
183501--183548	17	2.8	17	96	0	87	39	14	25	20	1.91
183634--183665	15	2.1	15	100	0	64	31	12	18	37	1.88
186010--186076	32	2.1	32	91	0	107	41	17	10	29	1.83
186953--186999	20	2.5	19	75	6	51	53	0	0	46	1.00
186955--187002	19	2.5	20	76	6	55	54	0	0	45	0.99
186944--187014	33	2.2	32	84	2	88	52	0	0	47	1.00
186955--187031	38	2.0	38	80	9	86	53	0	0	46	1.00
187892--188102	104	2.0	104	100	0	422	50	2	4	42	1.36
188681--188748	23	2.9	24	80	12	79	44	0	0	55	0.99
188697--188783	30	2.8	31	84	8	99	40	1	1	57	1.14
189050--189100	25	2.0	27	84	7	70	58	1	0	39	1.09
189043--189103	25	2.5	23	77	15	59	57	1	0	40	1.08
189231--189295	11	5.7	11	79	13	78	64	0	1	33	1.03
189223--189296	24	3.2	23	79	12	73	62	0	1	36	1.04
189227--189291	35	1.9	33	87	6	94	64	0	1	33	1.03
189265--189367	16	6.2	17	69	19	67	56	0	0	42	1.06
189280--189363	33	2.5	33	86	7	118	53	1	0	45	1.08
189695--189771	25	3.1	24	75	15	77	44	1	0	54	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189733--189786	24	2.3	25	84	9	69	50	0	0	50	1.00
190254--190278	10	2.5	10	100	0	50	8	0	0	92	0.40
190294--190334	20	2.0	21	90	4	66	46	0	0	53	1.00
190294--190342	20	2.5	19	83	9	55	44	0	0	55	0.99
190515--190543	12	2.3	13	94	5	51	27	0	3	68	1.05
191905--191947	18	2.4	18	84	3	52	60	18	0	20	1.36
193271--193297	2	13.5	2	100	0	54	48	0	0	51	1.00
193926--193975	18	2.8	18	77	11	59	58	0	4	38	1.17
193926--193972	19	2.6	18	86	3	58	59	0	4	36	1.17
194469--194502	7	4.9	7	88	0	50	47	2	0	50	1.16

Tables:   1   2   3   4   5   6   7   8   9   10