Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold196
Parameters: 2 7 7 80 10 50 1000
Length:  7488280

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   

This is table  47  of  47  ( 5587 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7419435--7419653
34
6.5
33
82
5
249
26
7
25
41
1.81
7419456--7419650
102
1.9
102
89
2
302
26
8
24
41
1.83
7424060--7424278
34
6.5
34
84
4
264
26
7
25
40
1.81
7424060--7424277
102
2.1
102
89
2
332
26
7
25
40
1.81
7426242--7426390
77
1.9
76
83
1
190
32
11
9
46
1.72
7428183--7428248
30
2.2
31
81
8
73
65
1
6
27
1.25
7429186--7429249
29
2.2
29
86
8
87
42
3
1
53
1.26
7431650--7431704
29
1.9
29
89
10
87
52
1
1
43
1.22
7431648--7431718
14
5.0
13
72
23
54
50
1
1
46
1.18
7432373--7432413
17
2.4
18
81
18
52
43
2
0
53
1.13
7432368--7432452
42
2.0
42
81
4
100
50
1
0
48
1.08
7432402--7432457
18
3.1
18
73
16
62
57
0
0
42
0.99
7432437--7432466
15
2.1
15
93
6
53
60
0
0
40
0.97
7433939--7433996
16
3.5
17
78
21
54
39
0
1
58
1.08
7433902--7434018
55
2.1
58
82
10
145
39
0
0
58
1.10
7435756--7435789
15
2.1
17
89
10
54
70
5
0
23
1.09
7436098--7436140
2
21.5
2
90
0
68
46
0
4
48
1.22
7436101--7436140
16
2.5
16
100
0
80
45
0
5
50
1.23
7438830--7438909
12
6.6
12
75
14
58
0
35
0
65
0.93
7438830--7438888
15
4.1
15
77
18
54
0
33
0
66
0.92
7438835--7438941
54
2.0
52
82
7
126
0
39
1
58
1.09
7438838--7438974
33
4.3
34
74
14
96
0
40
2
56
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7438852--7438963
21
5.0
22
74
23
83
0
41
1
56
1.10
7439769--7439808
21
2.0
21
85
9
57
35
0
5
60
1.19
7440909--7440951
2
21.5
2
100
0
86
51
0
0
48
1.00
7442493--7442641
77
1.9
76
84
1
199
31
10
10
47
1.71
7443809--7443875
34
2.0
34
90
0
107
47
11
5
34
1.65
7444874--7444949
33
2.3
34
77
6
84
47
1
3
47
1.29
7445240--7445277
19
2.1
19
85
5
51
65
5
0
28
1.14
7446187--7446221
15
2.2
16
90
5
54
74
0
0
25
0.82
7446933--7446987
17
3.4
16
75
25
53
40
0
1
58
1.09
7447005--7447047
18
2.3
19
84
4
61
32
2
0
65
1.06
7450395--7450443
12
4.0
12
84
5
53
81
0
10
8
0.87
7450405--7450454
23
2.2
23
88
0
73
84
0
8
8
0.79
7450405--7450454
12
4.2
12
84
5
66
84
0
8
8
0.79
7450412--7450461
23
2.2
23
100
0
100
80
0
8
12
0.92
7450412--7450454
11
3.8
11
87
6
68
83
0
6
9
0.80
7450974--7451004
2
15.5
2
100
0
62
51
0
0
48
1.00
7454115--7454154
21
1.9
21
90
10
64
40
0
0
60
0.97
7454151--7454194
18
2.4
19
84
3
63
52
0
0
47
1.00
7455396--7455436
13
2.8
15
78
14
50
36
0
0
63
0.95
7456136--7456280
30
4.8
30
83
5
168
38
6
0
53
1.33
7456193--7456246
16
3.5
16
71
19
60
38
9
1
50
1.45
7456298--7456370
28
2.6
28
78
6
85
54
0
1
43
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7456300--7456372
27
2.6
28
76
6
76
54
0
1
43
1.08
7456734--7456763
5
6.0
5
92
0
51
43
0
0
56
0.99
7458815--7458860
3
15.3
3
100
0
92
32
0
0
67
0.91
7460998--7461041
13
3.6
12
82
14
54
34
0
2
63
1.07
7461032--7461084
26
2.0
26
85
7
72
56
3
1
37
1.28
7461068--7461137
32
2.3
31
79
18
83
55
1
0
42
1.08
7461775--7461832
25
2.3
27
82
8
68
46
0
0
53
1.00
7462086--7462140
25
2.2
26
83
3
67
45
0
0
54
0.99
7461714--7462336
303
2.1
305
96
0
1153
38
4
8
49
1.52
7462304--7462369
31
2.1
31
88
0
96
42
3
1
53
1.25
7463911--7464034
55
2.3
55
95
0
221
28
11
16
43
1.83
7466032--7466062
16
1.9
16
93
0
53
35
0
0
64
0.94
7467463--7467544
33
2.4
35
74
13
82
54
2
1
41
1.21
7467465--7467538
31
2.4
29
72
14
69
55
2
1
40
1.22
7479723--7479747
6
4.2
6
100
0
50
84
0
0
16
0.63
7481620--7481678
17
3.3
18
73
17
52
54
0
0
45
0.99
7481634--7481671
12
2.9
14
80
15
53
52
0
0
47
1.00
7482075--7482121
2
23.5
2
95
0
85
48
2
0
48
1.13
7482292--7482316
2
12.5
2
100
0
50
48
0
0
52
1.00
7484798--7484856
22
2.6
22
84
12
75
49
0
3
47
1.18
7486160--7486211
20
2.7
20
80
14
63
55
1
0
42
1.10
7487072--7487124
23
2.2
24
83
9
65
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7488105--7488150
3
15.3
3
100
0
92
67
0
0
32
0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47

The End!