genome.fa.s196.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold196
Parameters: 2 7 7 80 10 50 1000
Length:  7488280

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   

This is table  26  of  47  ( 5587 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4038763--4038948	39	4.6	38	78	13	183	25	26	21	26	2.00
4038768--4039007	126	1.9	126	89	1	374	26	26	20	27	1.99
4039210--4039403	33	6.0	33	73	13	163	17	32	14	35	1.91
4039210--4039429	33	7.0	32	73	14	147	18	32	15	34	1.91
4039251--4039523	27	9.1	27	70	18	125	20	31	13	34	1.91
4039218--4039551	93	3.6	93	83	4	360	20	32	14	32	1.92
4039344--4039496	61	2.5	60	80	7	175	20	32	12	34	1.90
4039391--4039552	88	1.9	88	85	3	229	23	32	13	30	1.93
4039530--4039624	29	3.3	29	80	11	90	33	32	16	16	1.92
4039551--4039634	28	2.9	30	78	20	90	32	30	16	20	1.95
4039695--4040195	39	11.7	39	68	19	243	25	23	21	29	1.99
4039646--4040254	87	7.0	87	92	0	914	25	23	20	29	1.99
4040461--4040796	27	10.9	32	73	16	248	21	32	13	32	1.92
4040495--4040797	60	5.1	59	72	18	173	21	33	13	32	1.92
4040463--4040714	33	8.0	32	77	15	222	20	33	13	32	1.91
4040495--4040621	62	2.1	59	85	8	168	21	33	12	32	1.91
4040462--4040784	94	3.5	92	84	7	392	21	32	13	32	1.92
4040590--4040741	60	2.5	60	87	5	218	21	33	12	32	1.90
4040775--4040869	29	3.3	29	84	8	115	33	33	16	15	1.91
4040796--4040879	28	2.9	30	79	16	97	32	30	17	19	1.95
4040940--4041215	39	6.6	39	77	15	250	27	25	20	26	1.99
4040979--4041332	39	7.8	48	74	17	255	25	25	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4040891--4041188	87	3.4	87	94	0	515	26	24	19	28	1.99
4041027--4041278	126	2.0	127	88	2	373	26	25	20	27	1.99
4041485--4041820	27	10.9	32	75	14	257	20	33	14	31	1.92
4041486--4041826	94	3.7	92	83	8	426	20	33	14	32	1.92
4041486--4041765	60	4.6	59	72	19	223	20	34	13	31	1.92
4041836--4041903	29	2.3	29	80	12	68	33	20	20	25	1.97
4041818--4041903	28	2.9	29	74	11	77	32	24	17	25	1.97
4041964--4042206	39	5.8	39	68	19	132	27	26	20	25	1.99
4041915--4042262	87	4.0	88	87	2	488	27	25	19	27	1.99
4042003--4042259	48	5.7	48	68	19	187	27	25	19	27	1.98
4042469--4042804	27	10.9	32	74	14	239	21	32	13	32	1.92
4042503--4042629	62	2.1	59	85	8	168	21	33	12	32	1.91
4042470--4042810	94	3.7	92	82	9	410	21	32	13	32	1.92
4042598--4042749	60	2.5	59	84	7	198	21	33	12	32	1.90
4042787--4042861	28	2.7	27	80	13	73	32	29	18	20	1.96
4042818--4042887	31	2.4	29	81	11	72	34	22	20	22	1.97
4042948--4043285	39	8.0	39	72	17	230	27	25	19	26	1.99
4042899--4043333	87	5.0	87	92	1	676	26	25	19	28	1.98
4041153--4044204	984	3.0	981	89	5	4295	25	26	17	31	1.97
4043256--4043387	49	2.6	49	84	4	156	22	26	18	31	1.97
4043540--4043789	33	7.9	32	71	15	182	18	32	14	34	1.91
4043541--4043877	87	3.7	88	80	9	288	20	31	14	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4043682--4043821	60	2.3	60	85	3	185	20	32	13	33	1.92
4043704--4043838	27	4.8	27	76	13	119	22	30	14	32	1.94
4043855--4043949	29	3.3	29	82	8	106	33	32	17	15	1.92
4043876--4043959	28	2.9	30	79	16	97	32	30	17	19	1.95
4044020--4044184	39	4.0	39	76	13	168	27	25	20	27	1.99
4043971--4044204	87	2.7	87	93	0	405	26	25	18	29	1.98
4044059--4044203	48	3.2	48	73	16	173	26	25	18	29	1.98
4044975--4045040	33	2.0	33	96	0	123	10	30	25	33	1.90
4045662--4045714	27	1.9	28	92	3	90	22	37	18	20	1.94
4047991--4048495	259	1.9	259	97	0	956	30	22	19	27	1.98
4053949--4054000	21	2.5	20	90	6	86	30	17	23	28	1.97
4056989--4057070	17	4.6	17	89	7	119	90	7	2	0	0.54
4056991--4057083	44	2.1	44	92	4	152	88	9	2	0	0.61
4056989--4057083	16	6.1	15	81	10	104	88	9	2	0	0.60
4056989--4057071	1	83.0	1	80	0	94	90	7	2	0	0.54
4057097--4057187	43	2.1	43	97	0	173	27	21	27	23	1.99
4057211--4057295	11	7.9	11	80	6	95	88	9	2	0	0.61
4057211--4057291	17	4.6	17	89	7	117	88	8	2	0	0.59
4057212--4057304	44	2.1	44	88	4	143	87	10	2	0	0.64
4057209--4057304	17	5.8	16	85	4	93	86	11	2	0	0.66
4057211--4057292	1	82.0	1	77	0	83	89	8	2	0	0.58
4056973--4057408	221	2.0	221	98	1	838	54	16	16	12	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4057318--4057417	43	2.3	43	98	0	191	27	22	30	21	1.98
4058773--4058913	55	2.5	54	85	5	165	26	34	17	21	1.96
4058861--4059472	33	19.8	32	76	13	468	20	32	13	33	1.92
4058833--4059491	153	4.3	150	75	14	521	21	32	13	32	1.92
4058787--4059432	27	21.3	27	72	18	313	21	32	14	31	1.93
4058860--4059491	247	2.6	247	84	5	787	21	32	13	32	1.92
4058891--4059462	94	6.1	93	79	10	525	20	31	13	34	1.91
4059453--4059547	29	3.3	29	84	8	115	33	32	16	16	1.92
4059474--4059557	28	2.9	30	81	16	106	32	29	17	20	1.96
4059618--4059782	39	4.0	39	77	13	159	27	24	20	27	1.99
4059671--4059819	48	3.3	48	77	16	199	25	26	19	28	1.99
4059576--4059915	87	3.9	88	88	1	488	27	24	18	30	1.98
4060754--4060778	13	1.9	13	100	0	50	36	16	16	32	1.90
4060735--4060810	32	2.4	32	90	0	116	31	14	19	34	1.92
4074618--4074700	28	2.9	28	78	8	87	84	9	4	1	0.82
4074618--4074701	38	2.3	37	80	13	93	84	9	4	1	0.81
4074621--4074688	10	6.9	10	76	6	68	85	8	5	0	0.75
4074618--4074689	1	72.0	1	71	0	54	86	8	5	0	0.72
4076121--4076211	30	3.1	30	82	9	125	28	34	16	20	1.95
4076123--4076259	27	4.9	28	83	4	127	29	35	15	20	1.93
4076234--4076555	33	10.1	33	82	12	354	20	33	11	34	1.89
4085706--4085735	13	2.3	13	94	0	51	40	13	13	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4085684--4085752	33	2.1	33	89	5	104	37	17	11	33	1.86
4085782--4085833	20	2.7	20	90	3	79	38	13	13	34	1.84
4085822--4085846	13	1.9	13	100	0	50	32	16	16	36	1.90
4085803--4085867	32	2.0	33	87	3	96	38	13	15	32	1.87
4087822--4088082	91	2.9	89	80	6	276	34	11	23	29	1.90
4087849--4088133	89	3.2	88	79	7	279	33	12	24	28	1.92
4090681--4090735	20	2.8	20	81	10	76	30	16	14	38	1.89
4095367--4095398	10	3.0	11	90	9	57	18	28	0	53	1.45
4104183--4104325	70	2.0	70	98	0	277	34	8	20	35	1.83
4104782--4104855	19	3.7	19	82	8	78	28	14	18	37	1.91
4104900--4104930	13	2.4	13	94	0	53	35	16	12	35	1.87
4106548--4106596	21	2.3	21	96	0	89	26	12	18	42	1.85
4107639--4107696	23	2.5	23	91	0	98	46	22	12	18	1.82
4107148--4107964	415	2.0	404	85	6	1083	33	17	13	36	1.88
4107545--4116067	612	13.9	609	86	3	10169	32	17	13	36	1.89
4116055--4117360	274	4.5	273	72	15	1059	32	16	13	37	1.88
4116066--4116490	136	3.1	136	68	9	369	32	15	13	38	1.86
4116851--4117285	136	3.2	136	68	3	388	31	16	15	37	1.90
4116055--4117973	885	2.2	885	92	0	3119	31	16	13	37	1.89
4117086--4120084	611	4.9	611	88	2	3991	31	17	13	37	1.89
4120105--4125460	613	8.8	611	84	3	6519	32	17	13	36	1.89
4125416--4128974	612	5.7	611	71	12	2344	32	16	13	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4126620--4126706	42	2.1	42	84	0	111	32	22	14	29	1.94
4126901--4127748	467	1.8	467	90	0	1383	33	16	13	36	1.88
4129036--4131875	610	4.7	607	82	4	3529	32	17	13	36	1.88
4131881--4133537	611	2.7	609	83	2	2100	31	17	13	36	1.89
4133163--4134034	468	1.9	468	88	0	1323	31	17	13	37	1.89
4133631--4136461	607	4.7	606	90	2	3924	32	17	13	36	1.89
4136525--4138123	611	2.6	610	83	2	2112	32	17	13	36	1.89
4138781--4138806	13	2.0	13	100	0	52	38	15	15	30	1.88
4141022--4141066	21	2.1	21	84	8	56	53	4	20	22	1.63
4142870--4142900	15	2.1	15	93	0	53	48	16	22	12	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47