genome.fa.s198.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold198
Parameters: 2 7 7 80 10 50 1000
Length:  1648337

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1584007--1584096	40	2.2	40	96	0	162	32	17	12	37	1.87
1584715--1585112	49	8.4	49	71	13	219	32	18	25	23	1.97
1585116--1585570	28	15.9	29	80	5	165	20	16	29	32	1.95
1585112--1585593	57	8.4	57	88	3	634	20	16	29	32	1.95
1587017--1587089	14	5.2	14	73	15	53	2	5	12	79	1.01
1587071--1587106	15	2.6	14	87	12	56	0	13	0	86	0.58
1595469--1595493	13	1.9	13	100	0	50	36	16	16	32	1.90
1595532--1595601	33	2.1	33	89	0	104	40	14	11	34	1.82
1595557--1595581	13	1.9	13	100	0	50	32	16	16	36	1.90
1605681--1605747	33	2.0	33	85	5	91	32	14	13	38	1.86
1606245--1606706	89	5.2	89	84	2	550	27	25	16	29	1.97
1607066--1607529	40	11.5	40	68	14	211	19	23	15	41	1.89
1607011--1607520	81	6.3	81	81	4	571	19	23	14	42	1.88
1607011--1607520	243	2.1	242	87	1	718	19	23	14	42	1.88
1607506--1607638	46	2.9	46	83	6	157	20	21	12	45	1.84
1607946--1608347	42	9.5	42	67	16	172	18	22	12	45	1.84
1607701--1608516	85	9.9	85	77	11	653	18	22	13	46	1.83
1608297--1608437	70	2.0	70	87	2	203	18	24	14	42	1.88
1609537--1609994	168	2.8	165	82	9	479	30	11	7	50	1.65
1612012--1612232	118	1.9	118	83	1	291	21	14	19	44	1.86
1612630--1612930	150	2.0	150	83	3	374	25	20	19	33	1.96
1614360--1614411	27	2.0	27	85	10	74	55	5	5	32	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1614715--1614743	15	1.9	15	100	0	58	41	10	13	34	1.79
1617135--1617185	3	17.7	3	88	8	79	29	1	0	68	1.00
1618052--1618090	19	2.1	19	85	9	53	0	17	0	82	0.68
1618054--1618098	23	2.0	23	90	0	72	0	20	0	80	0.72
1618063--1618100	13	2.8	13	92	4	58	0	18	0	81	0.69
1618052--1618090	10	4.1	10	90	6	55	0	17	0	82	0.68
1618672--1619173	164	3.1	164	82	5	543	49	8	11	30	1.69
1637267--1637305	21	1.9	20	85	15	53	41	2	5	51	1.38
1644136--1644189	21	2.7	20	77	8	65	35	14	12	37	1.85
1644133--1644189	19	2.9	19	76	7	69	33	14	12	40	1.83
1646972--1646997	13	2.0	13	100	0	52	30	15	15	38	1.88
1647267--1647311	21	2.1	21	84	8	56	22	20	4	53	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!