genome.fa.s198.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold198
Parameters: 2 7 7 80 10 50 1000
Length:  1648337

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257419--257443	13	1.9	13	100	0	50	36	16	16	32	1.90
257399--257465	33	2.0	33	88	0	98	32	11	14	40	1.83
257506--257530	13	1.9	13	100	0	50	32	16	16	36	1.90
257539--257667	52	2.5	52	93	0	213	34	17	17	31	1.93
271491--271583	6	15.7	6	81	11	70	82	17	0	0	0.66
271491--271552	1	62.0	1	77	0	61	88	11	0	0	0.51
271486--271582	15	6.1	15	85	9	113	81	18	0	0	0.69
271486--271583	31	3.0	31	88	8	126	81	18	0	0	0.69
271555--271580	3	8.7	3	100	0	52	69	30	0	0	0.89
273021--273374	29	11.7	29	75	12	209	29	27	16	26	1.97
273081--273165	31	3.0	28	82	6	91	35	28	16	20	1.94
273204--273295	35	2.7	36	78	8	102	20	30	11	36	1.89
273269--273420	28	5.3	28	85	5	182	36	27	16	19	1.93
273015--273420	58	6.8	58	70	15	215	30	28	15	26	1.96
273442--273623	95	1.9	95	86	4	260	23	26	19	30	1.98
273537--273682	52	2.8	52	87	0	220	22	26	18	32	1.97
273709--273946	48	4.7	48	70	12	172	21	27	16	34	1.95
273753--273969	57	4.2	51	66	17	149	23	28	16	32	1.96
273596--273969	157	2.4	157	92	1	615	22	27	16	33	1.96
274948--274972	13	1.9	13	100	0	50	36	16	16	32	1.90
275068--275196	52	2.5	52	96	0	231	34	17	17	30	1.93
278055--278202	52	2.9	51	86	5	217	31	17	17	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278191--278215	13	1.9	13	100	0	50	36	16	16	32	1.90
278258--278322	20	3.6	20	73	26	81	46	12	12	29	1.78
278256--278355	33	3.0	33	94	0	164	42	14	12	32	1.82
278278--278335	13	3.9	13	73	26	53	39	13	13	32	1.85
279170--279551	49	7.8	53	79	11	265	32	16	24	26	1.96
279274--279551	43	6.1	43	80	12	313	31	17	24	27	1.97
279238--279551	49	6.6	49	81	11	368	31	17	23	27	1.97
279221--279551	92	3.5	92	91	3	473	32	16	24	27	1.96
279571--279694	28	4.3	28	82	11	128	16	15	30	37	1.89
279668--279758	35	2.6	34	81	5	103	38	12	28	20	1.89
279735--279995	86	3.0	86	85	5	319	26	17	27	29	1.97
279621--280000	57	6.4	57	75	11	316	27	16	27	29	1.97
281378--281445	1	68.0	1	79	0	73	0	0	10	89	0.48
281378--281445	16	4.5	15	92	5	102	0	0	10	89	0.48
281378--281445	21	3.3	20	85	6	100	0	0	10	89	0.48
281380--281443	11	5.9	11	83	9	87	0	0	10	89	0.50
294867--295015	52	2.9	51	87	4	217	31	16	18	33	1.93
295004--295028	13	1.9	13	100	0	50	36	16	16	32	1.90
295091--295115	13	1.9	13	100	0	50	32	16	16	36	1.90
300050--300075	13	2.0	13	100	0	52	38	15	15	30	1.88
300032--300095	32	2.0	33	87	3	94	40	17	14	28	1.88
302295--302344	21	2.3	21	80	10	57	56	4	18	22	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306255--306292	13	2.9	13	88	0	58	34	15	15	34	1.90
306404--306449	21	2.2	20	81	11	58	32	19	4	43	1.71
308132--308167	16	2.2	16	95	0	63	44	5	36	13	1.68
308851--308876	13	2.0	13	100	0	52	38	15	15	30	1.88
308833--308896	32	2.0	33	87	9	96	39	18	14	28	1.90
308833--308896	33	2.0	32	87	9	94	39	18	14	28	1.90
318636--318689	20	2.7	20	91	0	81	38	12	12	35	1.82
319561--319639	20	3.8	20	81	14	90	36	12	13	36	1.83
330451--330512	20	3.0	21	79	15	58	48	0	1	50	1.10
330582--330672	42	2.2	42	84	7	114	51	3	2	42	1.30
331083--331122	18	2.2	20	86	13	59	45	0	0	55	0.99
331080--331127	20	2.4	20	82	6	62	50	0	0	50	1.00
331568--331602	7	5.1	7	86	6	54	28	0	0	71	0.86
331557--331631	13	6.0	13	77	13	68	33	2	0	64	1.08
331557--331631	12	6.0	12	79	13	71	33	2	0	64	1.08
331589--331632	23	2.0	22	86	4	61	31	4	0	63	1.14
331557--331631	35	2.0	39	82	12	95	33	2	0	64	1.08
332252--332310	28	2.0	30	81	12	70	35	10	5	49	1.59
333118--333169	27	1.9	27	84	0	68	51	0	9	38	1.35
333883--333941	27	2.1	28	84	6	75	57	0	5	37	1.21
332401--339285	769	8.9	770	88	3	9622	39	11	10	38	1.75
340061--340085	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340038--340102	32	2.0	33	90	3	105	29	13	18	38	1.89
340178--340215	20	1.9	20	100	0	76	31	10	13	44	1.77
342558--342635	20	3.7	20	73	15	66	38	15	16	29	1.90
348734--348784	19	2.6	20	90	3	77	25	13	19	41	1.88
353024--353050	10	2.7	10	100	0	54	0	0	22	77	0.76
353704--353771	19	3.9	19	78	21	85	35	11	14	38	1.83
353725--353749	13	1.9	13	100	0	50	36	16	16	32	1.90
353706--353768	32	2.0	32	96	0	117	34	12	15	36	1.86
353811--353836	13	2.0	13	100	0	52	30	15	15	38	1.88
353791--353857	33	2.0	33	88	0	98	25	14	16	43	1.86
356209--356333	52	2.4	52	78	6	146	31	24	11	33	1.90
356322--356393	28	2.6	28	86	8	94	23	34	18	23	1.96
356268--356472	107	1.9	108	81	3	252	27	27	15	29	1.96
368740--368765	13	2.0	13	100	0	52	38	15	15	30	1.88
368719--368785	33	2.0	33	88	0	98	43	16	14	25	1.86
368805--368872	19	3.9	18	76	23	83	38	14	11	35	1.83
368827--368851	13	1.9	13	100	0	50	32	16	16	36	1.90
368808--368870	32	2.0	32	96	0	117	36	15	12	34	1.86
368968--369008	13	3.2	13	82	0	55	14	4	0	80	0.87
369601--370620	55	18.4	54	88	5	1331	22	20	28	28	1.98
369601--370619	165	6.1	163	91	4	1476	22	20	28	28	1.98
369845--369930	29	3.1	29	65	21	83	18	19	32	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370479--370564	27	3.1	27	62	15	68	24	18	29	27	1.98
385999--386075	27	2.8	28	84	5	95	22	22	32	23	1.98
388489--388514	13	2.0	13	100	0	52	38	15	15	30	1.88
388468--388534	33	2.0	33	88	0	98	43	16	14	25	1.86
388554--388621	19	3.9	18	75	23	74	38	13	11	36	1.81
388576--388600	13	1.9	13	100	0	50	32	16	16	36	1.90
388557--388619	32	2.0	32	93	0	108	36	14	12	36	1.84
388677--388733	21	2.7	21	94	0	96	38	19	8	33	1.82
388747--388774	14	2.0	14	100	0	56	14	7	0	78	0.95
390648--390777	1	130.0	1	73	0	98	86	10	1	1	0.72
390658--390774	15	7.6	15	80	19	118	85	11	1	1	0.75
390648--390776	27	4.9	25	83	10	152	86	10	1	1	0.72
390648--390777	43	3.0	44	86	6	176	86	10	1	1	0.72
392217--392535	58	5.5	58	85	6	400	31	28	17	22	1.96
392215--392536	88	3.7	86	85	6	420	31	28	17	22	1.96
392220--392538	30	11.0	30	80	11	337	31	28	17	22	1.96
392527--392687	52	3.2	52	76	16	196	24	24	15	34	1.95
392542--392631	43	2.1	43	93	0	153	26	24	17	31	1.97
392585--392722	52	2.6	52	81	3	159	25	24	15	34	1.95
393656--393680	13	1.9	13	100	0	50	32	16	16	36	1.90
393689--393869	52	3.5	52	97	0	335	34	18	17	28	1.94
397342--397391	21	2.3	21	80	10	57	56	4	18	22	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401231--401308	20	3.7	20	73	18	68	28	12	15	43	1.83
401297--401334	13	2.9	13	96	0	67	34	18	15	31	1.92
401455--401500	21	2.2	20	81	11	58	32	19	4	43	1.71
403878--403941	32	2.0	33	87	3	94	42	17	12	28	1.85
405231--405281	20	2.5	21	78	18	63	33	19	15	31	1.93
405271--405295	13	1.9	13	100	0	50	32	16	16	36	1.90
405283--405335	20	2.6	21	82	8	65	37	16	16	28	1.91
405395--405420	13	2.0	13	100	0	52	38	15	15	30	1.88
405377--405440	33	2.0	32	87	3	92	40	20	10	28	1.86
407974--408027	24	2.2	25	81	18	62	59	0	5	35	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11