genome.fa.s198.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold198
Parameters: 2 7 7 80 10 50 1000
Length:  1648337

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028930--1029185	137	1.9	137	85	1	352	25	27	17	28	1.98
1033734--1034070	31	11.2	31	78	5	237	25	29	12	32	1.92
1033727--1034063	60	5.6	60	77	11	269	25	29	12	32	1.92
1033788--1034112	29	10.9	29	77	10	221	25	27	12	34	1.92
1034121--1034181	33	1.9	32	83	6	79	37	19	18	24	1.94
1039609--1039690	28	2.9	28	80	7	96	26	17	31	24	1.97
1039673--1039843	51	3.3	51	77	4	189	33	11	25	29	1.91
1039826--1039901	27	2.8	28	88	6	102	21	21	34	23	1.97
1046274--1046328	19	2.9	19	97	0	101	34	10	14	40	1.81
1046368--1046393	13	2.0	13	100	0	52	30	15	15	38	1.88
1046348--1046442	33	3.0	33	70	14	92	27	14	15	42	1.86
1046346--1046442	20	4.8	21	74	9	85	28	14	15	41	1.86
1048840--1048914	27	2.7	28	89	6	109	24	33	20	22	1.97
1048898--1049121	53	4.3	52	80	5	229	30	25	11	32	1.91
1049109--1049180	28	2.6	28	82	8	85	22	33	19	25	1.97
1053042--1053079	18	2.1	19	85	5	51	18	18	7	55	1.66
1054969--1055034	33	2.0	33	84	0	87	27	16	13	42	1.86
1057394--1057532	51	2.7	50	80	7	165	32	23	10	33	1.89
1057597--1057672	28	2.7	29	88	6	104	23	31	19	25	1.98
1057655--1057774	51	2.4	51	85	2	161	30	30	12	26	1.93
1057705--1057924	79	2.8	78	83	3	269	29	25	14	30	1.94
1060308--1060333	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1060290--1060353	32	2.0	33	87	3	94	40	17	14	28	1.88
1064345--1064375	15	2.1	15	93	0	53	48	16	22	12	1.80
1066572--1066617	21	2.2	20	81	11	58	32	19	4	43	1.71
1069013--1069064	19	2.7	20	84	6	70	40	17	13	28	1.87
1080158--1080241	1	84.0	1	73	0	60	85	7	3	3	0.81
1080158--1080229	16	4.4	16	76	13	67	86	8	1	4	0.76
1080158--1080239	17	4.6	17	78	7	74	85	7	3	3	0.82
1080158--1080241	24	3.4	25	76	5	80	85	7	3	3	0.81
1081304--1082005	55	12.3	55	80	10	750	27	27	20	24	1.99
1081304--1082005	282	2.5	278	85	8	923	27	27	20	24	1.99
1081989--1082078	42	2.1	42	82	8	103	18	26	14	40	1.89
1082876--1082941	33	2.0	33	84	0	87	25	15	16	42	1.87
1085270--1085300	8	3.8	8	95	4	53	61	25	0	12	1.32
1091199--1091250	20	2.7	20	90	3	79	26	13	21	38	1.90
1091294--1091344	20	2.5	21	87	3	68	33	17	11	37	1.86
1092940--1092983	21	2.1	21	83	8	54	25	31	4	38	1.76
1097107--1097151	21	2.1	21	84	8	56	22	20	4	53	1.63
1099357--1099382	13	2.0	13	100	0	52	30	15	15	38	1.88
1099519--1099928	205	2.0	205	90	0	642	39	13	8	38	1.76
1104483--1104795	79	3.9	79	88	1	439	33	14	24	27	1.94
1104667--1104716	27	1.9	26	88	8	75	30	22	26	22	1.99
1104498--1104795	157	1.9	159	89	1	465	32	15	25	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1104673--1104901	106	2.2	106	86	4	311	31	15	25	27	1.96
1104751--1104823	28	2.6	28	85	6	94	27	20	28	23	1.99
1104595--1104963	185	2.0	185	89	3	573	32	14	25	27	1.94
1104779--1104959	78	2.3	79	84	5	242	32	14	25	27	1.94
1109675--1110435	76	10.7	71	75	12	476	25	23	13	37	1.91
1110172--1110291	62	1.9	65	84	8	167	21	24	15	39	1.91
1110107--1110366	133	2.0	133	83	6	330	25	24	13	36	1.92
1110235--1110435	70	2.9	70	81	8	230	26	24	11	37	1.89
1110896--1111063	92	1.8	92	89	3	266	30	15	11	42	1.82
1110872--1111087	92	2.3	93	79	7	262	31	16	12	39	1.86
1113355--1113692	82	4.2	82	78	9	309	31	26	10	31	1.90
1114313--1114382	20	3.6	19	76	3	68	34	21	10	34	1.87
1118461--1118525	34	1.9	34	90	0	103	46	6	18	29	1.73
1126172--1126423	105	2.4	106	73	9	255	31	21	11	35	1.90
1126513--1126876	105	3.4	106	77	7	348	31	21	7	39	1.82
1126473--1126878	105	3.8	107	77	8	345	31	22	8	37	1.83
1130326--1130383	20	2.8	20	97	2	107	31	10	13	44	1.78
1130687--1130738	21	2.5	21	100	0	104	44	17	5	32	1.72
1131181--1131224	21	2.1	21	83	8	54	27	31	2	38	1.69
1132860--1132906	21	2.3	21	82	10	62	44	4	19	31	1.70
1136916--1136960	21	2.1	21	84	8	56	22	20	4	53	1.63
1142929--1142954	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1144100--1144154	20	2.7	21	85	2	76	38	12	18	30	1.88
1144202--1144227	13	2.0	13	100	0	52	38	15	15	30	1.88
1144184--1144247	32	2.0	33	90	3	103	42	15	14	28	1.86
1148294--1148324	15	2.1	15	93	0	53	48	16	22	12	1.80
1150011--1150042	8	4.0	8	100	0	64	12	0	25	62	1.30
1150393--1150439	21	2.3	20	78	10	51	34	19	4	42	1.70
1152823--1152848	13	2.0	13	100	0	52	38	15	15	30	1.88
1152805--1152868	32	2.0	33	90	3	103	42	15	14	28	1.86
1156839--1156869	15	2.1	15	93	0	53	48	16	22	12	1.80
1158951--1158975	13	1.9	13	100	0	50	32	20	16	32	1.94
1159087--1159132	21	2.2	20	81	11	58	32	19	4	43	1.71
1161402--1161458	20	2.8	20	86	7	80	38	15	17	28	1.91
1161527--1161552	13	2.0	13	100	0	52	38	15	15	30	1.88
1161509--1161572	32	2.0	33	87	3	94	40	17	14	28	1.88
1164116--1164141	13	2.0	13	100	0	52	30	15	15	38	1.88
1164861--1164899	20	2.0	20	94	0	69	25	33	5	35	1.78
1170639--1170683	21	2.1	21	84	8	56	22	20	4	53	1.63
1174244--1174297	28	1.9	28	85	7	74	20	22	18	38	1.93
1174193--1174438	79	3.1	77	78	10	266	27	20	11	40	1.87
1174211--1174490	79	3.7	76	77	12	231	27	21	10	41	1.85
1174351--1174574	122	1.8	122	85	3	317	27	23	10	39	1.87
1174471--1174750	79	3.6	79	86	2	386	28	22	11	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1174471--1174759	156	1.9	156	86	2	420	27	22	12	36	1.91
1184931--1185007	20	3.8	20	85	0	109	44	15	10	29	1.80
1185752--1187553	113	16.0	113	82	4	1132	27	15	29	28	1.96
1185784--1187593	28	64.6	28	80	7	1323	27	15	29	28	1.96
1195599--1195675	20	3.8	20	81	6	93	41	11	16	29	1.84
1196024--1196058	17	2.1	17	88	0	52	2	14	2	80	0.95
1196357--1196770	145	2.9	145	78	5	412	30	26	15	27	1.96
1196554--1196775	73	3.1	72	71	13	193	29	29	15	25	1.96
1198132--1198156	13	1.9	13	100	0	50	24	16	20	40	1.91
1199124--1199148	13	1.9	13	100	0	50	36	16	16	32	1.90
1199103--1199167	33	2.0	32	87	3	94	29	15	16	38	1.90
1207213--1207264	19	2.5	22	78	18	74	36	1	40	21	1.64
1207227--1207273	19	2.6	17	78	15	51	31	2	34	31	1.70
1207826--1207883	19	2.9	19	82	5	71	32	13	17	36	1.89
1209701--1209731	15	2.1	15	93	0	53	45	0	25	29	1.54
1216813--1216884	20	3.7	19	86	3	72	40	11	16	31	1.84
1217776--1217842	33	2.0	33	88	5	100	28	17	29	23	1.97
1223291--1223419	52	2.5	52	93	0	231	28	18	17	34	1.94
1223484--1223535	13	3.5	13	73	26	50	34	19	13	32	1.90
1223492--1223555	19	3.7	19	74	23	77	35	17	12	34	1.87
1223484--1223554	32	2.2	32	97	0	133	35	18	12	33	1.89
1227142--1227180	20	2.0	20	94	0	69	41	15	15	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1227204--1227259	19	2.9	19	91	2	85	35	16	17	30	1.92
1227845--1227893	21	2.3	22	82	10	57	36	8	14	40	1.75
1230483--1230643	84	1.9	84	82	7	202	54	3	16	26	1.59
1232128--1232152	13	1.9	13	100	0	50	36	16	16	32	1.90
1238112--1238205	9	11.6	9	73	15	73	15	2	8	73	1.17
1238079--1238196	15	7.9	14	73	18	71	18	2	5	72	1.16
1238117--1238205	15	5.6	15	80	12	63	15	2	8	73	1.19
1238114--1238205	39	2.3	39	80	17	109	15	2	8	73	1.16
1238079--1238205	16	7.9	16	75	10	116	18	2	6	73	1.15
1238115--1238179	7	8.7	7	75	12	58	16	1	7	73	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11