genome.fa.s221.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold221
Parameters: 2 7 7 80 10 50 1000
Length:  2539808

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  1  of  19  ( 2279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3699--3729	2	15.5	2	100	0	62	48	0	0	51	1.00
4548--4575	2	14.0	2	100	0	56	0	50	0	50	1.00
4588--4617	2	15.0	2	100	0	60	50	0	0	50	1.00
4950--5022	33	2.2	33	81	13	89	47	10	12	28	1.75
5773--5853	36	2.2	37	84	6	103	19	16	13	50	1.77
8321--8355	16	2.2	16	90	10	54	31	0	20	48	1.50
8507--8688	38	4.8	39	78	9	171	23	11	21	43	1.85
8488--8688	75	2.7	75	81	6	219	22	13	21	41	1.89
10769--10849	41	2.0	42	85	2	110	55	11	8	24	1.63
10768--10859	41	2.2	41	80	5	105	55	13	7	23	1.63
19091--19136	14	3.4	13	82	8	56	52	0	0	47	1.00
19282--19357	38	2.0	38	97	0	143	39	11	5	43	1.64
20168--20241	37	2.0	37	94	0	130	27	13	21	37	1.91
20902--20930	14	2.0	15	93	6	51	48	37	0	13	1.43
23115--23151	17	2.1	18	90	5	58	51	35	0	13	1.41
25961--25991	15	2.1	15	93	0	53	54	0	0	45	0.99
28370--28403	17	2.0	17	88	11	52	23	32	29	14	1.94
37996--38036	18	2.2	19	83	12	50	39	0	4	56	1.21
40556--40588	11	3.1	11	91	4	50	60	0	9	30	1.27
40765--40792	2	14.0	2	100	0	56	50	0	0	50	1.00
41690--41723	2	17.5	2	93	6	61	52	0	0	47	1.00
41839--41878	21	1.9	21	89	0	62	45	5	2	47	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44677--44734	18	3.2	18	74	13	57	24	10	0	65	1.23
50536--50564	14	2.0	15	93	6	51	65	0	0	34	0.93
50471--50830	124	2.9	123	88	5	500	52	2	3	42	1.30
50785--50814	15	2.0	15	93	0	51	63	0	0	36	0.95
50841--50875	14	2.6	13	86	8	52	34	0	2	62	1.10
51197--51261	30	2.1	29	83	11	76	49	0	1	49	1.10
51150--51420	108	2.4	109	86	10	365	43	1	2	52	1.24
51248--51386	39	3.7	39	67	24	91	43	2	1	52	1.22
51150--51420	113	2.5	106	87	7	364	43	1	2	52	1.24
51344--51479	64	2.1	62	84	9	173	44	0	1	54	1.09
55496--55530	3	11.7	3	100	0	70	65	0	0	34	0.93
59521--59644	50	2.5	49	81	10	137	41	1	0	57	1.08
66225--66259	13	2.6	14	91	8	56	82	0	2	14	0.77
66516--66542	3	9.0	3	100	0	54	0	33	0	66	0.92
66548--66575	6	4.7	6	100	0	56	28	35	17	17	1.93
72888--73101	111	1.9	111	100	0	428	30	14	17	36	1.90
74727--74769	18	2.3	19	88	8	61	44	4	0	51	1.22
74859--74918	31	1.9	31	100	0	120	51	13	5	30	1.62
74993--75054	8	7.6	8	77	8	63	82	1	12	3	0.87
74982--75054	25	3.0	24	86	4	94	78	1	15	5	1.00
74982--75054	24	3.0	23	86	7	85	78	1	15	5	1.00
75071--75128	31	1.9	31	86	6	84	32	0	1	65	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75246--75304	19	3.1	19	76	9	57	37	3	3	55	1.33
75381--75414	14	2.4	14	85	0	50	44	0	0	55	0.99
75440--75491	11	5.0	11	77	11	56	26	0	1	71	0.97
75441--75497	20	2.7	21	86	10	73	24	0	3	71	1.01
76225--76254	15	1.9	16	93	6	53	60	0	0	40	0.97
76218--76257	16	2.5	17	84	12	57	55	0	0	45	0.99
77094--77175	17	4.7	17	70	16	53	46	0	0	53	1.00
77111--77141	13	2.4	13	100	0	62	51	0	0	48	1.00
77151--77204	20	2.8	20	83	5	67	51	0	0	48	1.00
77169--77213	20	2.2	20	84	0	54	62	0	0	37	0.96
77473--77501	2	14.5	2	100	0	58	51	0	0	48	1.00
78028--78054	2	13.5	2	100	0	54	48	0	0	51	1.00
78416--78445	5	6.0	5	92	0	51	36	3	0	60	1.14
78416--78444	15	1.9	15	100	0	58	34	3	0	62	1.12
83569--83635	28	2.4	28	82	5	73	38	2	16	41	1.64
88649--88694	2	23.0	2	100	0	92	50	0	0	50	1.00
91170--91240	33	2.2	33	100	0	142	49	19	11	19	1.78
91228--91263	2	18.0	2	88	0	54	47	2	2	47	1.31
92547--92601	2	28.0	2	80	10	51	41	5	0	52	1.24
99476--99512	2	18.5	2	88	0	56	45	0	54	0	1.00
99861--99914	25	2.1	27	82	6	67	24	5	5	64	1.36
100276--100300	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100678--100751	20	3.7	20	81	3	103	35	13	20	31	1.91
100696--100771	21	3.7	21	82	3	109	40	11	18	28	1.86
100678--100771	41	2.3	41	100	0	188	38	12	19	29	1.89
100810--100835	13	2.0	13	100	0	52	38	15	15	30	1.88
103044--103088	21	2.1	21	84	8	56	53	4	20	22	1.63
108633--108658	13	2.0	13	100	0	52	38	15	15	30	1.88
109436--109475	15	2.4	17	88	12	57	47	5	0	47	1.24
111065--111094	3	10.0	3	100	0	60	33	0	0	66	0.92
111546--111575	6	5.0	6	100	0	60	16	33	33	16	1.92
112536--112577	3	14.0	3	94	0	75	30	0	2	66	1.04
113347--113410	31	2.1	31	82	2	76	46	4	12	35	1.62
123560--123590	4	7.8	4	100	0	62	22	0	0	77	0.77
125196--125230	2	17.5	2	100	0	70	48	0	0	51	1.00
125700--125730	1	31.0	1	93	0	53	0	96	0	3	0.21
127769--127796	2	14.0	2	100	0	56	50	0	50	0	1.00
128258--128320	17	3.5	17	73	16	56	57	0	0	42	0.99
129504--129528	2	12.5	2	100	0	50	52	0	0	48	1.00
133954--133990	2	18.5	2	100	0	74	0	48	0	51	1.00
136970--137013	20	2.2	20	100	0	88	61	0	0	38	0.96
136965--137006	6	6.7	6	89	10	66	61	0	0	38	0.96
137144--137208	2	32.5	2	96	0	121	49	1	0	49	1.10
142942--142976	18	2.1	18	89	10	56	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146227--146288	26	2.4	25	76	15	63	53	0	0	46	1.00
146657--146767	14	7.3	15	72	22	63	60	0	0	39	0.97
146656--146796	45	3.3	43	72	13	105	59	0	0	40	0.97
146965--147003	15	2.5	15	87	4	51	43	0	0	56	0.99
146968--147062	27	3.4	28	67	21	72	40	3	0	56	1.15
147019--147072	24	2.2	24	80	6	65	40	0	0	59	0.98
150929--150953	12	2.1	12	100	0	50	84	0	0	16	0.63
151144--151178	14	2.5	13	86	13	52	54	0	2	42	1.15
151114--151263	65	2.4	58	76	16	158	49	2	2	45	1.30
151204--151535	13	26.6	13	61	26	57	50	1	1	46	1.18
151228--151297	26	2.8	25	80	6	88	52	0	0	47	1.00
151238--151410	18	9.3	18	67	25	60	51	0	0	47	1.09
151238--151353	60	1.9	58	84	8	153	52	0	0	47	1.00
151272--151411	34	4.0	36	74	19	143	52	0	0	46	1.11
151279--151357	26	3.1	25	73	7	77	53	0	0	46	1.00
151248--151357	26	4.6	24	67	16	68	52	0	0	47	1.00
151378--151660	21	13.1	21	67	19	88	48	2	3	46	1.30
151276--151417	18	7.9	18	69	21	77	52	0	0	46	1.10
151273--151483	10	18.6	12	65	23	61	50	1	1	46	1.19
151386--151511	23	5.5	23	71	17	68	50	1	3	44	1.27
151466--151536	13	5.2	13	72	21	65	46	0	2	50	1.16
151340--151598	31	8.0	31	69	17	102	47	1	3	47	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151544--151638	44	2.1	45	83	11	115	48	3	3	45	1.34
152215--152256	16	2.4	18	88	11	61	47	0	0	52	1.00
152921--152946	3	8.7	3	100	0	52	69	0	0	30	0.89
153162--153236	30	2.5	31	77	14	84	49	0	4	46	1.20
153847--153882	2	18.0	2	100	0	72	50	0	0	50	1.00
156859--156893	2	17.5	2	100	0	70	51	0	0	48	1.00
159168--159198	2	15.5	2	93	0	53	48	0	3	48	1.17
159388--159422	2	17.5	2	93	0	61	51	45	0	2	1.16
159605--159633	2	14.5	2	100	0	58	48	0	0	51	1.00
160290--160339	18	2.7	19	78	6	66	58	0	0	42	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19