genome.fa.s221.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold221
Parameters: 2 7 7 80 10 50 1000
Length:  2539808

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  5  of  19  ( 2279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571722--571755	15	2.3	15	89	0	50	50	17	0	32	1.47
573213--573267	24	2.3	22	77	17	56	40	0	1	58	1.09
573237--573269	15	2.1	17	88	11	52	39	0	0	60	0.97
573457--573489	12	2.6	13	85	4	50	24	0	3	72	0.98
574312--574376	10	6.5	10	77	12	53	60	1	0	38	1.07
574298--574361	20	3.4	19	72	21	55	64	0	0	35	0.94
574706--574798	30	3.0	31	78	13	102	48	0	0	51	1.00
574706--574776	29	2.3	30	81	15	83	46	0	0	53	1.00
574757--574821	13	5.0	13	77	5	60	52	0	0	47	1.00
574765--574818	25	2.2	25	82	0	63	51	0	0	48	1.00
575136--575191	28	2.1	27	87	9	80	57	1	1	39	1.20
575149--575191	13	3.1	14	80	12	61	58	2	2	37	1.24
577031--577066	16	2.3	16	90	4	56	33	11	0	55	1.35
584014--584086	27	3.0	23	76	20	67	34	0	0	65	0.93
584015--584087	25	2.9	27	78	15	84	35	0	0	64	0.94
584034--584116	12	6.9	11	71	23	53	36	0	0	63	0.94
584008--584070	15	4.3	15	75	20	62	39	0	0	60	0.97
584015--584080	13	5.1	13	70	24	50	36	0	0	63	0.95
584115--584154	21	1.9	21	84	0	53	55	7	0	37	1.29
584964--584988	2	12.5	2	100	0	50	52	0	0	48	1.00
587972--588048	21	3.6	21	81	6	84	53	0	2	44	1.14
588004--588049	16	2.9	16	84	9	58	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589201--589240	19	2.2	19	86	8	57	52	0	0	47	1.00
590435--590463	3	9.7	3	100	0	58	31	0	0	68	0.89
591047--591088	21	2.0	20	90	4	66	54	0	0	45	0.99
591906--591944	21	1.9	19	85	10	51	66	0	0	33	0.92
592207--592240	2	17.0	2	93	0	59	0	47	0	52	1.00
593651--593754	52	2.0	52	98	0	199	24	17	12	46	1.82
594828--595306	239	2.0	239	100	0	958	31	15	20	33	1.93
596264--596306	21	2.0	21	100	0	86	39	9	18	32	1.83
596938--596962	2	12.5	2	100	0	50	48	0	0	52	1.00
597520--597575	21	2.6	22	75	10	62	44	0	0	55	0.99
597518--597563	16	2.8	17	78	12	51	43	0	0	56	0.99
598382--598413	2	16.0	2	100	0	64	50	0	0	50	1.00
599572--599618	18	2.7	18	81	12	53	59	4	6	29	1.41
599572--599610	19	2.1	18	85	4	51	61	2	5	30	1.31
601025--601065	14	2.9	14	88	3	55	60	0	2	36	1.10
601741--601779	20	2.0	20	84	0	51	46	2	0	51	1.14
601799--601832	16	2.2	15	89	5	50	32	0	0	67	0.91
603326--603367	21	2.0	20	86	9	57	47	4	0	47	1.23
603326--603393	17	3.5	20	78	19	63	44	4	0	51	1.21
604540--604582	20	2.3	19	84	11	61	51	9	0	39	1.34
604598--604650	17	3.1	17	76	10	54	64	1	0	33	1.05
604613--604655	18	2.6	17	82	13	54	58	2	0	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605867--605891	6	4.2	6	100	0	50	0	0	20	80	0.72
616863--616933	37	1.9	36	86	8	99	47	2	0	49	1.16
616915--616987	32	2.3	33	83	9	89	39	0	1	58	1.06
617143--617196	8	6.0	9	78	20	51	44	0	0	55	0.99
617153--617264	20	5.6	20	69	19	74	42	0	1	54	1.17
619454--619513	25	2.4	24	86	10	77	30	0	1	68	0.99
619454--619522	32	2.2	31	79	18	81	30	0	1	68	0.99
621513--621552	3	13.3	3	94	0	71	65	2	0	32	1.06
622011--622040	13	2.3	13	94	0	51	40	20	10	30	1.85
623316--623378	16	3.9	16	81	8	74	34	0	1	63	1.04
623588--623621	13	2.5	13	85	4	50	73	0	0	26	0.83
625312--625427	30	3.9	30	87	5	148	29	28	6	36	1.81
628730--628773	23	2.0	23	86	4	63	50	4	4	40	1.43
633656--633696	19	2.2	19	86	8	57	43	2	0	53	1.13
633701--633732	3	10.3	3	93	6	55	65	0	0	34	0.93
641328--641360	17	2.0	17	88	5	50	6	21	0	72	1.05
645291--645331	14	2.9	14	89	7	57	36	0	0	63	0.95
646899--646960	23	2.7	22	80	19	74	64	0	1	33	1.03
646907--646971	22	2.9	23	80	13	66	66	0	0	33	0.92
647317--647534	34	6.5	34	85	5	282	40	27	7	24	1.82
647315--647534	67	3.3	67	88	1	323	40	27	7	24	1.82
651951--652166	34	6.4	34	83	6	262	40	26	7	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651949--652166	67	3.2	67	87	1	301	40	26	7	25	1.82
652686--652725	19	2.1	19	90	0	62	55	0	2	42	1.13
653140--653203	24	2.7	23	82	4	65	42	0	4	53	1.22
654149--654193	24	1.9	24	86	4	65	55	0	0	44	0.99
654716--654761	18	2.4	20	73	20	53	41	0	2	56	1.11
654834--654859	3	8.7	3	100	0	52	30	0	0	69	0.89
655362--655430	25	3.0	22	78	19	77	40	0	0	59	0.97
655720--655759	18	2.2	19	86	4	55	67	0	2	30	1.04
661001--661037	2	18.0	2	94	5	65	48	2	0	48	1.15
662110--662161	25	2.0	25	82	10	61	51	0	0	48	1.00
662114--662161	24	2.0	25	84	12	64	52	0	0	47	1.00
662745--662803	20	2.6	23	74	17	61	54	0	1	44	1.10
662872--662920	25	1.9	26	88	12	75	40	0	0	59	0.98
662896--662988	17	5.9	15	68	26	59	38	1	1	59	1.12
662888--662985	30	3.1	30	77	15	83	37	1	1	60	1.11
662877--663007	19	7.3	19	66	16	66	37	0	0	61	1.07
662915--663007	36	2.7	35	82	11	95	35	1	1	62	1.10
662900--662985	15	5.4	15	70	22	52	36	1	1	61	1.11
662918--663031	35	3.3	35	77	15	96	36	2	0	59	1.17
665566--665599	5	6.6	5	93	6	59	38	0	2	58	1.13
668769--668794	2	13.0	2	100	0	52	50	0	0	50	1.00
668813--668862	20	2.6	18	79	17	55	40	0	4	56	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670301--670336	2	18.5	2	94	5	65	50	0	0	50	1.00
670908--670932	2	12.5	2	100	0	50	52	0	0	48	1.00
672754--672779	1	26.0	1	100	0	52	100	0	0	0	0.00
674459--674606	76	1.9	76	97	0	278	48	12	8	31	1.69
681739--681764	13	2.0	13	100	0	52	61	0	0	38	0.96
681746--681822	17	4.7	16	70	15	59	54	1	1	42	1.16
681856--681979	63	2.0	64	85	1	169	50	5	11	33	1.62
686836--686868	3	11.0	3	100	0	66	33	0	0	66	0.92
686972--687036	28	2.3	27	78	14	69	36	0	0	63	0.95
688763--688796	13	2.6	13	95	0	59	44	8	8	38	1.67
689091--689137	17	2.7	18	83	12	53	40	4	6	48	1.48
689440--689474	2	17.5	2	93	0	61	48	0	2	48	1.16
690117--690175	16	3.3	18	77	17	68	62	3	0	33	1.12
691106--691159	26	2.0	27	89	3	83	24	3	38	33	1.73
691312--691337	3	8.7	3	100	0	52	69	0	0	30	0.89
692929--692982	20	2.8	18	78	15	63	44	0	0	55	0.99
692928--692998	23	3.1	24	78	17	71	45	0	0	54	0.99
694944--695008	31	2.2	29	83	5	76	53	0	0	46	1.00
694949--695013	29	2.2	27	77	17	67	53	0	0	46	1.00
697806--697870	31	2.2	29	86	10	87	49	0	0	50	1.00
697835--697880	19	2.3	20	92	7	76	41	0	0	58	0.98
700520--700553	14	2.4	15	85	14	54	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701493--701537	2	22.5	2	100	0	90	51	0	0	48	1.00
706114--706382	145	1.9	143	83	5	353	45	11	7	34	1.70
708039--708100	17	3.8	16	78	21	58	41	1	0	56	1.09
708039--708105	16	4.0	17	78	19	70	41	1	0	56	1.08
708018--708110	33	2.6	35	73	24	88	44	2	0	53	1.12
709269--709307	16	2.5	16	87	4	62	43	0	0	56	0.99
712842--712883	11	3.7	12	84	9	52	47	0	0	52	1.00
712828--712891	17	3.9	17	79	4	78	54	0	0	45	0.99
712833--712883	6	8.8	6	74	8	52	50	0	0	49	1.00
712827--712898	17	4.3	17	77	5	58	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19