genome.fa.s221.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold221
Parameters: 2 7 7 80 10 50 1000
Length:  2539808

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  18  of  19  ( 2279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2287692--2287750	22	2.6	23	79	12	68	42	0	3	54	1.17
2289344--2289392	18	2.5	20	83	12	75	12	18	16	53	1.73
2289354--2289391	18	2.1	18	100	0	76	15	15	18	50	1.79
2298458--2298548	45	2.0	45	100	0	182	43	6	14	35	1.71
2299282--2299344	2	31.5	2	96	0	117	47	0	1	50	1.10
2300542--2300594	21	2.5	21	87	6	72	60	11	1	26	1.41
2300999--2301031	17	1.9	17	93	0	57	54	0	6	39	1.25
2301913--2301960	3	16.0	3	100	0	96	33	0	0	66	0.92
2302158--2302201	23	1.9	24	86	9	65	34	11	0	54	1.36
2304286--2304310	2	12.5	2	100	0	50	52	0	0	48	1.00
2304354--2304413	23	2.7	22	77	12	61	51	0	0	48	1.00
2307971--2308016	15	3.2	15	75	12	51	39	0	0	60	0.97
2307971--2308025	28	2.0	28	82	7	67	41	0	0	58	0.98
2308791--2308819	11	2.5	12	94	5	51	6	17	0	75	1.01
2313725--2313780	3	19.0	3	85	3	78	60	0	0	39	0.97
2313818--2313902	21	3.7	23	77	20	81	62	0	2	35	1.08
2313876--2313999	46	2.7	45	74	16	110	57	0	0	42	0.98
2313885--2313996	27	4.1	27	68	21	63	56	0	0	43	0.99
2314345--2314392	14	3.4	14	82	2	51	52	4	0	43	1.20
2314885--2314909	11	2.3	11	100	0	50	36	0	0	64	0.94
2315183--2315216	7	4.5	8	92	7	54	55	0	0	44	0.99
2315182--2315216	15	2.4	14	90	4	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2315210--2315264	16	3.5	15	82	9	65	60	5	0	34	1.20
2315349--2315425	38	2.0	38	100	0	154	41	12	12	32	1.82
2316459--2316488	7	4.3	7	91	0	51	56	13	30	0	1.37
2318718--2318749	17	1.9	17	93	6	57	78	0	3	18	0.89
2318891--2318952	29	2.2	29	85	2	81	46	4	12	35	1.64
2320344--2320385	17	2.5	17	81	18	52	64	0	0	35	0.94
2320344--2320385	16	2.5	17	81	18	52	64	0	0	35	0.94
2321637--2321668	9	3.6	9	91	0	55	28	0	0	71	0.86
2322939--2323225	145	2.0	148	90	2	463	36	8	19	35	1.82
2330558--2330615	28	2.1	28	83	0	71	55	0	0	44	0.99
2331127--2331160	3	10.7	3	87	12	50	67	0	0	32	0.91
2331127--2331160	10	3.6	9	88	11	50	67	0	0	32	0.91
2331489--2331599	8	12.6	9	67	22	58	44	1	0	54	1.10
2331495--2331550	30	2.0	28	89	10	87	39	1	0	58	1.08
2331521--2331614	16	5.5	17	70	15	61	44	2	0	53	1.12
2331566--2331613	19	2.6	19	80	9	55	45	2	0	52	1.12
2334506--2334530	13	1.9	13	100	0	50	44	0	0	56	0.99
2335562--2335611	19	2.5	19	80	6	55	44	0	0	56	0.99
2335562--2335767	105	2.1	102	82	13	254	47	0	1	50	1.16
2336626--2336739	50	2.3	48	80	5	122	32	12	14	41	1.82
2342428--2342466	13	2.9	13	81	7	51	46	2	0	51	1.14
2342428--2342469	14	3.1	14	80	16	52	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2346401--2346438	13	2.8	14	88	8	60	55	0	0	44	0.99
2347304--2347336	18	1.9	17	88	11	50	66	0	0	33	0.92
2347483--2347526	21	2.1	21	87	8	63	68	2	0	29	1.02
2350758--2350790	11	3.1	11	86	8	50	30	0	0	69	0.88
2354229--2354274	17	2.6	19	76	16	53	58	0	0	41	0.98
2354239--2354274	19	1.9	18	88	5	54	58	0	0	41	0.98
2354860--2355048	35	5.7	32	69	19	106	55	0	2	41	1.15
2354840--2355064	39	5.5	40	67	22	103	56	0	1	41	1.13
2354839--2354939	20	4.8	22	68	21	65	55	0	0	43	1.06
2354921--2355008	15	5.4	15	69	26	63	59	1	1	38	1.13
2354861--2355065	67	3.2	63	76	15	201	56	0	1	41	1.14
2354889--2355008	7	17.9	7	66	26	55	56	0	0	41	1.11
2354907--2355094	59	3.2	59	74	15	181	58	0	2	38	1.14
2354834--2355009	17	10.6	17	68	12	57	56	0	1	42	1.11
2354838--2355099	126	2.0	130	81	10	306	58	0	1	39	1.12
2357048--2357087	19	2.1	19	85	0	53	55	0	0	45	0.99
2357373--2357416	3	14.7	3	90	0	61	29	4	2	63	1.26
2358027--2358066	16	2.5	17	88	8	57	50	0	0	50	1.00
2358097--2358190	30	3.2	30	76	15	88	52	0	1	46	1.07
2358311--2358340	7	4.3	7	100	0	60	43	0	0	56	0.99
2358336--2358393	25	2.3	25	79	8	64	55	1	1	41	1.20
2358788--2358857	19	3.8	18	67	14	54	50	1	0	48	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2359227--2359277	11	4.2	12	76	16	52	52	0	0	47	1.00
2359725--2359758	17	2.1	16	94	5	59	58	0	0	41	0.98
2360468--2360536	22	3.1	22	78	14	61	43	0	2	53	1.15
2360530--2360574	16	2.9	16	84	15	67	42	0	2	55	1.12
2360528--2360580	16	3.4	15	80	14	63	43	0	1	54	1.11
2363969--2364011	21	2.0	21	86	8	61	41	13	6	37	1.72
2364773--2364855	22	3.8	22	71	20	66	50	0	1	48	1.08
2364829--2364899	14	5.2	14	69	24	62	57	0	0	42	0.98
2364831--2364899	27	2.5	28	86	11	99	57	0	0	42	0.98
2366720--2366771	18	3.0	16	76	17	50	28	1	5	63	1.28
2370041--2370097	21	2.7	21	88	0	87	31	28	14	26	1.94
2370024--2370103	21	3.8	21	81	0	79	36	27	10	26	1.88
2372210--2372249	3	13.3	3	100	0	80	32	0	0	67	0.91
2372755--2372793	20	2.0	20	85	10	53	56	0	0	43	0.99
2372774--2372825	16	3.2	17	76	17	56	51	0	0	48	1.00
2372795--2372836	14	2.9	15	79	10	52	42	0	0	57	0.99
2372760--2372836	33	2.3	33	80	8	84	46	0	0	53	1.00
2373315--2373468	78	2.0	79	85	3	213	29	13	18	38	1.89
2377057--2377124	26	2.6	26	81	9	84	44	0	0	55	0.99
2377057--2377096	20	2.0	21	85	9	57	47	0	0	52	1.00
2385554--2385606	2	26.5	2	96	0	97	49	0	50	0	1.00
2388401--2388448	19	2.7	18	77	6	53	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2388419--2388471	26	2.1	26	89	3	81	47	0	0	52	1.00
2390416--2390475	7	8.7	7	73	10	52	40	0	1	58	1.08
2395371--2395404	6	5.5	6	92	3	50	85	11	0	2	0.71
2396144--2396195	16	3.1	16	83	13	61	67	1	0	30	1.02
2396144--2396189	16	2.9	16	87	6	67	69	0	0	30	0.89
2396987--2397051	33	2.0	33	84	6	87	41	0	3	55	1.15
2398294--2398323	2	15.0	2	100	0	60	50	0	0	50	1.00
2398611--2398669	17	3.5	17	83	2	75	57	1	0	40	1.09
2398610--2398658	16	3.0	16	85	5	71	61	2	0	36	1.08
2399448--2399483	18	2.1	18	89	5	56	44	11	0	44	1.39
2402297--2402327	16	1.9	16	93	0	53	51	0	6	41	1.27
2407440--2407490	24	2.1	23	92	7	84	31	0	17	50	1.46
2407437--2407486	13	4.1	13	80	10	61	38	0	18	44	1.50
2407645--2407682	20	2.0	20	89	5	60	52	0	0	47	1.00
2411604--2411630	2	13.5	2	100	0	54	48	0	0	51	1.00
2411977--2412001	12	2.1	12	100	0	50	56	0	0	44	0.99
2412107--2412161	28	2.0	27	85	3	74	52	1	1	43	1.22
2412756--2412820	18	4.1	16	76	18	64	69	0	0	30	0.89
2412785--2412889	18	5.7	18	66	16	63	56	1	2	39	1.25
2412867--2412907	11	3.5	11	86	6	55	63	0	0	36	0.95
2413044--2413073	15	2.1	15	93	6	53	40	0	0	60	0.97
2416050--2416090	2	19.5	2	90	9	64	48	4	0	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2416050--2416090	13	3.2	13	96	3	75	48	4	0	46	1.23
2416637--2416678	3	13.7	3	80	14	50	33	0	0	66	0.92
2416838--2416898	9	6.9	9	75	7	54	32	0	0	67	0.91
2416839--2416983	11	12.0	11	66	22	53	33	0	4	62	1.19
2416820--2416898	31	2.4	31	85	10	95	35	0	0	64	0.94
2417542--2417600	11	5.0	11	75	24	50	32	0	0	67	0.91
2417519--2417598	31	2.4	31	83	12	88	32	0	1	66	1.00
2417803--2417836	18	1.9	17	88	5	50	44	0	2	52	1.16
2418460--2418499	10	3.9	10	87	6	62	85	0	12	2	0.71
2419466--2419510	11	4.1	11	76	0	54	82	0	15	2	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19